arnC:Quickview: Difference between revisions

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{|   id="L49aee0549c0c7" class=" tableEdit New_Quickview_Table"


|-
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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[arnC:Gene|''arnC]]'' (synonyms: ''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2'')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''arnC''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[arnC:Gene_Product(s)|YfbF product]]<ref name='LIB:Riley_2006'/>: undecaprenyl phosphate-L-Ara4FN transferase product, PmrF product, B2254 product, ArnC product
''yfbF, ECK2247, b2254, JW2248, pmrF, ORF2''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, ORF2''
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undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose transferase
(L-Ara4N is 4-amino-4-deoxy-L-arabinose)
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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undecaprenyl phosphate-L-Ara4FN transferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
undecaprenyl phosphate-L-Ara4FN transferase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Undecaprenyl phosphate-alpha-L-ara4FN synthase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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undecaprenyl phosphate-4-amino-4-deoxy-L-arabinose transferase  
''undecaprenyl phosphate-L-Ara4FN transferase<ref name='LIB:Riley_2006'/>, YfbF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PmrF<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B2254<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ArnC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2247, JW2248, ORF2, pmrF, yfbF, b2254''
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yfbE|yfbE]]<ref name='LIB:EcoCyc10.6'/>  
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|-
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!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=arnC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7167]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003743&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=arnC&loc=MG1655%3A2365093..2366061,W3110%3A2371741..2372709,DH10B%3A2456081..2457049,REL606%3A2313584..2314552,BW2952%3A2250898..2251866]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2250898&end=2251866&gene=arnC&aa=mfeihpvkkvsvvipvyneqeslpelirrtttaceslgkeyeilliddgssdnsahmlveasqaenshivsillnrnygqhsaimagfshvtgdliitldadlqnppeeiprlvakadegydvvgtvrqnrqdswfrktaskminrliqrttgkamgdygcmlrayrrhivdamlhcherstfipilanifarraieipvhhaerefgeskysfmrlinlmydlvtcltttplrmlsllgsiiaiggfsiavllvilrltfgpqwaaegvfmlfavlftfigaqfigmgllgeyigriytdvrarpryfvqqvirpsskene]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=arnC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=arnC]]&nbsp;&nbsp;


 
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Latest revision as of 21:52, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

arnC

Gene Synonym(s)

yfbF, ECK2247, b2254, JW2248, pmrF, ORF2[1][2], ORF2

Product Desc.

undecaprenyl phosphate-L-Ara4FN transferase[2][3]

Undecaprenyl phosphate-alpha-L-ara4FN synthase[4]

Product Synonyms(s)

undecaprenyl phosphate-L-Ara4FN transferase[1], YfbF[2][1], PmrF[2][1], B2254[2][1], ArnC[2][1] , ECK2247, JW2248, ORF2, pmrF, yfbF, b2254

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfbE[2]

Regulation/Activity
Quick Links



        

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Notes

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Involved in the modification of lipid A phosphates with aminoarabinose that is required for polymyxin B and cationic antimicrobial peptide resistance. UDP-beta-4-deoxy-4-formamido-L-arabinose is the sugar donor. basRS regulon.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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