cydB:Quickview: Difference between revisions

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Quickview

Standard Name	cydB
Gene Synonym(s)	ECK0722, b0734, JW0723, cyd-2^[1]
Product Desc.	cytochrome bd-I terminal oxidase subunit II^[2]^[3]; Component of cytochrome bd-I terminal oxidase^[2]^[3] Cytochrome d (bd-I) terminal oxidase subunit II; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr^[4]
Product Synonyms(s)	cytochrome d terminal oxidase, subunit II^[1], B0734^[2]^[1], CydB^[2]^[1] , ECK0722, JW0723, b0734
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): cydAB^[2], OP00140
Regulation/Activity
Quick Links
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Notes

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Fnr and ArcA regulons. ArcA-P antagonizes H-NS repression of cydAB in response to limiting oxygen.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 ^2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] 3.0 ^3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

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[2]

[3]

[4]

@@ Line 23: / Line 23: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
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+{|   id="N49aee2ce1c5c8"  class=" tableEdit New_Quickview_Table"
 |-
 !align=left {{table_heading_style}} |Standard Name
+||
+''cydB''
 |-
 !align=left {{table_heading_style}} |Gene Synonym(s)
+||
+''ECK0722, b0734, JW0723, cyd-2''<ref name='LIB:Riley_2006'/>
 |-
 !align=left {{table_heading_style}} |Product Desc.
+||
+cytochrome <i>bd</i>-I terminal oxidase subunit II<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;
+Component of [[:Category:Complex:cytochrome bd-I terminal oxidase|cytochrome bd-I terminal oxidase]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
+Cytochrome d (bd-I) terminal oxidase subunit II; upregulated in biofilms and microaerobic conditions; aerobically repressed by H-NS; anaerobically repressed by Fnr<ref name='LIB:EcoGene'/>
 |-
 !align=left {{table_heading_style}} |Product Synonyms(s)
+||
+''cytochrome d terminal oxidase, subunit II<ref name='LIB:Riley_2006'/>, B0734<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, CydB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0722, JW0723, b0734''
+|-
+!align=left {{table_heading_style}} |Function from GO
+||
+<GO_nr />
 |-
 !align=left {{table_heading_style}} |Knock-Out Phenotype
+||
 |-
 !align=left {{table_heading_style}} |Regulation/Expression
+||
+transcription unit(s): [[:Category:Txn_unit:cydAB|cydAB]]<ref name='LIB:EcoCyc10.6'/>, OP00140
 |-
 !align=left {{table_heading_style}} |Regulation/Activity
+||
+|-
+!align=left {{table_heading_style}} |Quick Links
+||
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cydB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10174]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000169&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cydB&loc=MG1655%3A772265..773404,W3110%3A773464..774603,DH10B%3A824857..825996,REL606%3A753924..755063,BW2952%3A675025..676164]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=675025&end=676164&gene=cydB&aa=midyevlrfiwwllvgvlligfavtdgfdmgvgmltrflgrndterriminsiaphwdgnqvwlitaggalfaawpmvyaaafsgfyvamilvlaslffrpvgfdyrskieetrwrnmwdwgifigsfvpplvigvafgnllqgvpfnvdeylrlyytgnffqllnpfgllagvvsvgmiitqgatylqmrtvgelhlrtrataqvaalvtlvcfalagvwvmygidgyvvkstmdhyaasnplnkevvreagawlvnfnntpilwaipalgvvlplltiltarmdkaawafvfssltlaciiltagiamfpfvmpsstmmnasltmwdatssqltlnvmtwvavvlvpiillytawcywkmfgritkediernthsly]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cydB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cydB]]&nbsp;&nbsp;
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cydB:Quickview: Difference between revisions

Latest revision as of 21:51, 27 May 2013

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