deoC:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="V49aee390987f6"  class=" tableEdit New_Quickview_Table" 
 
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!align=left {{table_heading_style}} |Standard Name
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''deoC''
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!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK4373, b4381, JW4344, dra, thyR, tlr''<ref name='LIB:Riley_2006'/>, tlr''
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Product Desc.
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[[deoC:Gene|''deoC]]'' (synonyms: ''ECK4373, b4381, JW4344, dra, thyR, tlr'')<ref name='LIB:Riley_2006'/>
DEOXYRIBOSE-P-ALD-
2-deoxy-D-ribose 5-phosphate aldolase (DERA); deoxyriboaldolase; binds selenium<ref name='LIB:EcoGene'/>
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Product Synonyms(s)
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[[deoC:Gene_Product(s)|DeoC product]]<ref name='LIB:Riley_2006'/>: 2-deoxyribose-5-phosphate aldolase, NAD(P)-linked product, B4381 product, Tlr product, Dra product, ThyR product
''2-deoxyribose-5-phosphate aldolase, NAD(P)-linked<ref name='LIB:Riley_2006'/>, B4381<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Tlr<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Dra<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, ThyR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, DeoC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , dra, ECK4373, JW4344, thyR, tlr, b4381''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Function from GO
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DEOXYRIBOSE-P-ALD-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
<GO_nr />
 
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:deoCABD|deoCABD]]<ref name='LIB:EcoCyc10.6'/>, OP00024, deo  
transcription unit(s): [[:Category:Txn_unit:deoCABD|deoCABD]]<ref name='LIB:EcoCyc10.6'/>, OP00024, deo  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=deoC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10221]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000215&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=deoC&loc=MG1655%3A4615346..4616125,W3110%3A4622003..4622782,REL606%3A4606557..4607336,DH10B%3A4661808..4662587,BW2952%3A4553830..4554609]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=4553830&end=4554609&gene=deoC&aa=mtdlkasslralklmdlttlndddtdekvialchqaktpvgntaaiciyprfipiarktlkeqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgfdlvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatpesarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgassllasllkalghgdgksassy]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=deoC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=deoC]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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Half of the native protein still retains the initial Met.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

deoC

Gene Synonym(s)

ECK4373, b4381, JW4344, dra, thyR, tlr[1], tlr

Product Desc.

DEOXYRIBOSE-P-ALD- 2-deoxy-D-ribose 5-phosphate aldolase (DERA); deoxyriboaldolase; binds selenium[2]

Product Synonyms(s)

2-deoxyribose-5-phosphate aldolase, NAD(P)-linked[1], B4381[3][1], Tlr[3][1], Dra[3][1], ThyR[3][1], DeoC[3][1] , dra, ECK4373, JW4344, thyR, tlr, b4381

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): deoCABD[3], OP00024, deo

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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Half of the native protein still retains the initial Met.[2]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
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