ebgC:Quickview: Difference between revisions

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!align=left |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''ebgC''  
''ebgC''
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!align=left |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3067, b3077, JW3048''<ref name='LIB:Riley_2006'/>
''ECK3067, b3077, JW3048''<ref name='LIB:Riley_2006'/>, JW3048''
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!align=left |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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evolved &beta;-D-galactosidase, &beta; subunit; cryptic gene<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
evolved &beta;-D-galactosidase, &beta; subunit; cryptic gene<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;  
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Evolved beta-galactosidase, beta subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme<ref name='LIB:EcoGene'/>
Evolved beta-galactosidase, beta subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme<ref name='LIB:EcoGene'/>
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!align=left |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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cryptic beta-D-galactosidase, beta subunit<ref name='LIB:Riley_2006'/>, B3077<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EbgC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''cryptic beta-D-galactosidase, beta subunit<ref name='LIB:Riley_2006'/>, B3077<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, EbgC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3067, JW3048, b3077''
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!align=left |Knock-Out Phenotype
!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ebgAC|ebgAC]]<ref name='LIB:EcoCyc10.6'/>, OP00170  
transcription unit(s): [[:Category:Txn_unit:ebgAC|ebgAC]]<ref name='LIB:EcoCyc10.6'/>, OP00170  
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!align=left |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ebgC&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10253]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000247&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ebgC&loc=MG1655%3A3223744..3224193,W3110%3A3224378..3224827,REL606%3A3158539..3158988,DH10B%3A3321489..3321938,BW2952%3A3110892..3111341]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3110892&end=3111341&gene=ebgC&aa=mriidnleqfrqiyasgkkwqrcveaienidniqpgvahsigdsltyrvetdsatdalftghrryfevhyylqgqqkieyapketlqvveyyrdetdreylkgcgetvevhegqivicdiheayrficnnavkkvvlkvtiedgyfhnk]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ebgC+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ebgC]]&nbsp;&nbsp;


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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ebgC

Gene Synonym(s)

ECK3067, b3077, JW3048[1], JW3048

Product Desc.

evolved β-D-galactosidase, β subunit; cryptic gene[2][3];

Component of evolved β-D-galactosidase[3]

Evolved beta-galactosidase, beta subunit; normal substrate and function unknown; alpha(4)beta(4) holoenzyme[4]

Product Synonyms(s)

cryptic beta-D-galactosidase, beta subunit[1], B3077[2][1], EbgC[2][1] , ECK3067, JW3048, b3077

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ebgAC[2], OP00170

Regulation/Activity
Quick Links



        

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Notes

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EbgC is required for full activity: it has been suggested to be involved in the rate-limiting degalactosylation step and/or in electrophilic catalysis by the EbgA active site Mg(2+). EbgC is a distant homolog of YiaL, YhcH and YjgK; all four match pfam PF04074.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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