fadB:Quickview: Difference between revisions

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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[fadB:Gene|''fadB]]'' (synonyms: ''ECK3838, b3846, JW3822, oldB'')<ref name='LIB:Riley_2006'/>
''fadB''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[fadB:Gene_Product(s)|FadB product]]<ref name='LIB:Riley_2006'/>: fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase product, 3-hydroxyacyl-CoA dehydrogenase product, B3846 product, OldB product
''ECK3838, b3846, JW3822, oldB''<ref name='LIB:Riley_2006'/>, oldB''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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dodecenoyl-CoA &delta;-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:fatty acid oxidation complex, &alpha; component|fatty acid oxidation complex, &alpha; component]]<ref name='LIB:EcoCyc10.6'/>,[[:Category:Complex:fatty acid oxidation complex|fatty acid oxidation complex]]<ref name='LIB:EcoCyc10.6'/>
Component of [[:Category:Complex:fatty acid oxidation complex, alpha component|fatty acid oxidation complex, α component]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>; [[:Category:Complex:fatty acid oxidation complex|fatty acid oxidation complex]]<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Multifunctional fatty acid oxidation complex FadAB; four enzyme activities: L-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA epimerase, dodecenoyl-CoA-delta-isomerase, and small-chain-length enoyl-CoA hydratase (cronotase)<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase<ref name='LIB:Riley_2006'/>, 3-hydroxyacyl-CoA dehydrogenase<ref name='LIB:Riley_2006'/>, B3846<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, OldB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, FadB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3838, JW3822, oldB, b3846''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:fadBA|fadBA]]<ref name='LIB:EcoCyc10.6'/>, OP00303  
transcription unit(s): [[:Category:Txn_unit:fadBA|fadBA]]<ref name='LIB:EcoCyc10.6'/>, OP00303  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=fadB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10279]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000273&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=fadB&loc=MG1655%3A4028994..4026805,W3110%3A3605710..3607899,REL606%3A4009344..4007155,DH10B%3A4127914..4125725,BW2952%3A3916474..3918663]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3916474&end=3918663&gene=fadB&aa=mlykgdtlyldwledgiaelvfdapgsvnkldtatvaslgeaigvleqqsdlkglllrsnkaafivgaditeflslflvpeeqlsqwlhfansvfnrledlpvptiaavngyalgggcecvlatdyrlatpdlriglpetklgimpgfggsvrmprmlgadsaleiiaagkdvgadqalkiglvdgvvkaeklvegakavlrqaingdldwkakrqpkleplklskieatmsftiakgmvaqtagkhypapitavktieaaarfgreealnlenksfvplahtnearalvgiflndqyvkgkakkltkdvetpkqaavlgagimgggiayqsawkgvpvvmkdindksltlgmteaakllnkqlergkidglklagvistihptldyagfdrvdivveavvenpkvkkavlaeteqkvrqdtvlasntstipiselanalerpenfcgmhffnpvhrmplveiirgekssdetiakvvawaskmgktpivvndcpgffvnrvlfpyfagfsqllrdgadfrkidkvmekqfgwpmgpaylldvvgidtahhaqavmaagfpqrmqkdyrdaidalfdanrfgqknglgfwrykedskgkpkkeedaavedllaevsqpkrdfseeeiiarmmipmvnevvrcleegiiatpaeadmalvyglgfppfhggafrwldtlgsakyldmaqqyqhlgplyevpeglrnkarhnepyyppveparpvgdlkta]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=fadB+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=fadB]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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FadR regulon. FadAB and FadIJ are paralogs. Binds TrxA (Kumar, 2004).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:51, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

fadB

Gene Synonym(s)

ECK3838, b3846, JW3822, oldB[1], oldB

Product Desc.

dodecenoyl-CoA δ-isomerase, enoyl-CoA hydratase, 3-hydroxybutyryl-CoA epimerase, 3-hydroxyacyl-CoA dehydrogenase[2][3];

Component of fatty acid oxidation complex, α component[2][3]; fatty acid oxidation complex[2][3]

Multifunctional fatty acid oxidation complex FadAB; four enzyme activities: L-3-hydroxyacyl-CoA dehydrogenase, 3-hydroxyacyl-CoA epimerase, dodecenoyl-CoA-delta-isomerase, and small-chain-length enoyl-CoA hydratase (cronotase)[4]

Product Synonyms(s)

fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase[1], 3-hydroxyacyl-CoA dehydrogenase[1], B3846[2][1], OldB[2][1], FadB[2][1] , ECK3838, JW3822, oldB, b3846

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): fadBA[2], OP00303

Regulation/Activity
Quick Links



        

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Notes

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FadR regulon. FadAB and FadIJ are paralogs. Binds TrxA (Kumar, 2004).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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