rapA:Quickview: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
imported>Wikientrybot
No edit summary
touch
 
(12 intermediate revisions by 2 users not shown)
Line 10: Line 10:
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
-->{{#css:Suppresslinks.css}}<css>{{:Suppresslinks.css}}</css>
<noinclude>{{TabsTop}}   
<noinclude>{{TabsTop}}   
{{Tab On|Quickview|hepA}}{{Tab|Gene|hepA}}{{Tab|Gene Product(s)|hepA}}{{Tab|Expression|hepA}}{{Tab|Evolution|hepA}}{{Tab|On One Page|hepA}}{{TabsBottom}}
{{Tab On|Quickview|rapA}}{{Tab|Gene|rapA}}{{Tab|Gene Product(s)|rapA}}{{Tab|Expression|rapA}}{{Tab|Evolution|rapA}}{{Tab|On One Page|rapA}}{{TabsBottom}}
{|
{|
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
|- style="background-color:white; border:solid 2px #CCFFFF; text-align:center; white-space: nowrap;"  
Line 23: Line 23:
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  
*  
****************************************************************************************** -->{{Quickview_table_help}}
****************************************************************************************** -->
{|border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  
{|   id="S49aee8a65efe3" class=" tableEdit New_Quickview_Table"


|-
|-
!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
||
''rapA''
|-
|-
!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
||
''ECK0060, b0059, JW0058, rapA, yabA'', hepA<ref name='LIB:Riley_2006'/>, hepA, yabA''
|-
|-
!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
||
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase<ref name='LIB:EcoGene'/>
|-
|-
!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
||
''RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)<ref name='LIB:Riley_2006'/>, B0059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0060, hepA, JW0058, yabA, b0059''
|-
!align=left {{table_heading_style}} |Function from GO
||
<GO_nr />
|-
|-
!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
||
|-
|-
!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
||
transcription unit(s): [[:Category:Txn_unit:rluA|rluA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rapA|rapA]]<ref name='LIB:EcoCyc10.6'/>
|-
|-
!align=left {{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
||
|-
!align=left {{table_heading_style}} |Quick Links
||
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hepA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11083]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001071&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hepA&loc=MG1655%3A63264..60358,W3110%3A63264..60358,DH10B%3A62378..60358,REL606%3A66068..63162,BW2952%3A60358..63264]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=60358&end=63264&gene=hepA&aa=mpftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdtitshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqidrmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevglgktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqhdaynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaieqlaehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknyrpvadavamllagnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrntrngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegdnatwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsiierdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldrigqahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqtegfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafamnlfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitwehplirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptpvrmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksaralidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldalrlivvthq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hepA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hepA]]&nbsp;&nbsp;


|-class='sortbottom'
|- class="tableEdit_footer"
|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.1883.S49aee8a65efe3&page=1883&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.1883.S49aee8a65efe3&page=1883&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> ||
|}
|}
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.1883.S49aee8a65efe3--></protect>
<!--box uid=bc145ea147f7e36caf09c1bfeed4ee9d.1883.S49aee8a65efe3--></protect>

Latest revision as of 21:49, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rapA

Gene Synonym(s)

ECK0060, b0059, JW0058, rapA, yabA, hepA[1], hepA, yabA

Product Desc.

RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor[2][3]

RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase[4]

Product Synonyms(s)

RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)[1], B0059[2][1], YabA[2][1], RapA[2][1], RapA[2][1] , ECK0060, hepA, JW0058, yabA, b0059

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rluA[2], rapA[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


HepA has sequence similarity to SWI2/SNF2 helicases. hepA is downstream of polB, but is not under lexA control. The mutant phentypes may be indirect since other genes, e.g. yeeZ and aaeA(yhcQ), are downregulated in hepA(rapA) mutants (Lynch, 2007).[4]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rapA:Quickview&oldid=1396857"