rapA:Quickview: Difference between revisions

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{{Tab On|Quickview|hepA}}{{Tab|Gene|hepA}}{{Tab|Gene Product(s)|hepA}}{{Tab|Expression|hepA}}{{Tab|Evolution|hepA}}{{Tab|On One Page|hepA}}{{TabsBottom}}
{{Tab On|Quickview|rapA}}{{Tab|Gene|rapA}}{{Tab|Gene Product(s)|rapA}}{{Tab|Expression|rapA}}{{Tab|Evolution|rapA}}{{Tab|On One Page|rapA}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[hepA:Gene|''hepA]]'' (synonyms: ''ECK0060, b0059, JW0058, rapA, yabA'')<ref name='LIB:Riley_2006'/>
''rapA''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[hepA:Gene_Product(s)|HepA product]]<ref name='LIB:Riley_2006'/>: RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor) product, B0059 product, YabA product, RapA product
''ECK0060, b0059, JW0058, rapA, yabA'', hepA<ref name='LIB:Riley_2006'/>, hepA, yabA''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)<ref name='LIB:Riley_2006'/>, B0059<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YabA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, RapA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0060, hepA, JW0058, yabA, b0059''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:rluA|rluA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:hepA|hepA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:rluA|rluA]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Txn_unit:rapA|rapA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=hepA&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11083]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001071&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=hepA&loc=MG1655%3A63264..60358,W3110%3A63264..60358,DH10B%3A62378..60358,REL606%3A66068..63162,BW2952%3A60358..63264]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=60358&end=63264&gene=hepA&aa=mpftlgqrwisdteselglgtvvavdartvtllfpstgenrlyarsdspvtrvmfnpgdtitshdgwqmqveevkeenglltyigtrldteesgvalrevfldsklvfskpqdrlfagqidrmdrfalryrarkysseqfrmpysglrgqrtsliphqlniahdvgrrhaprvlladevglgktieagmilhqqllsgaaervliivpetlqhqwlvemlrrfnlrfalfdderyaeaqhdaynpfdteqlvicsldfarrskqrlehlceaewdllvvdeahhlvwsedapsreyqaieqlaehvpgvllltatpeqlgmeshfarlrlldpnrfhdfaqfveeqknyrpvadavamllagnklsndelnmlgemigeqdiepllqaansdsedaqsarqelvsmlmdrhgtsrvlfrntrngvkgfpkrelhtiklplptqyqtaikvsgimgarksaedrardmlyperiyqefegdnatwwnfdprvewlmgyltshrsqkvlvicakaatalqleqvlreregiraavfhegmsiierdraaawfaeedtgaqvllcseigsegrnfqfashmvmfdlpfnpdlleqrigrldrigqahdiqihvpylektaqsvlvrwyhegldafehtcptgrtiydsvyndlinylaspdqtegfddlikncreqhealkaqleqgrdrlleihsnggekaqalaesieeqdddtnliafamnlfdiiginqddrgdnmivltpsdhmlvpdfpglsedgititfdrevalaredaqfitwehplirngldlilsgdtgsstisllknkalpvgtllveliyvveaqapkqlqlnrflpptpvrmlldkngnnlaaqvefetfnrqlnavnrhtgsklvnavqqdvhailqlgeaqieksaralidaarneadeklsaelsrlealravnpnirddeltaiesnrqqvmesldqagwrldalrlivvthq]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=hepA+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=hepA]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
{{BacktoTop}}
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HepA has sequence similarity to SWI2/SNF2 helicases. hepA is downstream of polB, but is not under lexA control. The mutant phentypes may be indirect since other genes, e.g. yeeZ and aaeA(yhcQ), are downregulated in hepA(rapA) mutants (Lynch, 2007).<ref name='LIB:EcoGene'/>




Latest revision as of 21:49, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

rapA

Gene Synonym(s)

ECK0060, b0059, JW0058, rapA, yabA, hepA[1], hepA, yabA

Product Desc.

RNA Polymerase (RNAP)-binding ATPase and RNAP recycling factor[2][3]

RNA polymerase binding protein; mutants are UV-S; mutant biofilms have less polysaccharide and are antibiotic sensitive; ATPase and putative helicase[4]

Product Synonyms(s)

RNA polymerase-associated helicase protein (ATPase and RNA polymerase recycling factor)[1], B0059[2][1], YabA[2][1], RapA[2][1], RapA[2][1] , ECK0060, hepA, JW0058, yabA, b0059

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): rluA[2], rapA[2]

Regulation/Activity
Quick Links



        

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Notes

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HepA has sequence similarity to SWI2/SNF2 helicases. hepA is downstream of polB, but is not under lexA control. The mutant phentypes may be indirect since other genes, e.g. yeeZ and aaeA(yhcQ), are downregulated in hepA(rapA) mutants (Lynch, 2007).[4]



References

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See Help:References for how to manage references in EcoliWiki.

  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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