matC:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''yagY, ECK0291, b0292, JW0286''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>
''yagY, ECK0291, b0292, JW0286''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/>, JW0286''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted protein<ref name='LIB:Riley_2006'/>, B0292<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MatC<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/>  
''predicted protein<ref name='LIB:Riley_2006'/>, B0292<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YagY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MatC<ref name='LIB:EcoCyc11.1'/><ref name='LIB:Riley_2006'/> , ECK0291, JW0286, yagY, b0292''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=matC&s=search PortEco search(matC)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=matC&loc=MG1655:309250..308582,W3110:309250..308582,DH10B:284800..284132,REL606:279540..280208 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=279540&end=280208&gene=matC&aa=mkkhllplallfsgispaqaldvgdissfmnsdsstlsktiknstdsgrlinirlerlssplddgqvismdkpdellltpaslllpaqasevirffykgpadekeryyrivwfdqalsdaqrdnanrsavatasarigtilvvaprqanyhfqyangsltntgnatlrilaygpclkaangkeckenyylmpgksrrftrvdtadnkgrvalwqgdkfipvk Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=matC+AND+escherichia+coli Pubmed(matC)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/search?q=matC Textpresso(matC)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=matC&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=matC&loc=MG1655%3A309250..308582,W3110%3A309250..308582,DH10B%3A284800..284132,REL606%3A279540..280208]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=279540&end=280208&gene=matC&aa=mkkhllplallfsgispaqaldvgdissfmnsdsstlsktiknstdsgrlinirlerlssplddgqvismdkpdellltpaslllpaqasevirffykgpadekeryyrivwfdqalsdaqrdnanrsavatasarigtilvvaprqanyhfqyangsltntgnatlrilaygpclkaangkeckenyylmpgksrrftrvdtadnkgrvalwqgdkfipvk]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=matC+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=matC]]&nbsp;&nbsp;


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Latest revision as of 21:48, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

matC

Gene Synonym(s)

yagY, ECK0291, b0292, JW0286[1][2], JW0286

Product Desc.

predicted protein[3][2]

Cryptic gene, required for Mat fimbria in O18K1H7 strains[4]

Product Synonyms(s)

predicted protein[1], B0292[3][1], YagY[3][1], MatC[2][1] , ECK0291, JW0286, yagY, b0292

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yagV[3]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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O18K1H7 matABC genes are required for Mat fimbria formation when cloned in K-12. matA mRNA was detected in K-12, but not matBC mRNA. First 20 aa are predicted to be a signal peptide.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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