murD:Quickview: Difference between revisions

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{|   id="Z49aeed72ba498"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[murD:Gene|''murD]]'' (synonyms: ''ECK0089, b0088, JW0086'')<ref name='LIB:Riley_2006'/>
''murD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[murD:Gene_Product(s)|MurD product]]<ref name='LIB:Riley_2006'/>: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase product, B0088 product
''ECK0089, b0088, JW0086''<ref name='LIB:Riley_2006'/>, JW0086''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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UDP-NACMURALA-GLU-LIG-MONOMER<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
UDP-NACMURALA-GLU-LIG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


D-glutamic acid adding enzyme; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase<ref name='LIB:Riley_2006'/>, B0088<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, MurD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0089, JW0086, b0088''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ|mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ|mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=murD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10620]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000613&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=murD&loc=MG1655%3A97087..98403,W3110%3A97087..98403,DH10B%3A71191..72507,REL606%3A99891..101207,BW2952%3A97086..98402]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=97086&end=98402&gene=murD&aa=madyqgknvviiglgltglscvdfflargvtprvmdtrmtppgldklpeaverhtgslndewlmaadlivaspgialahpslsaaadagieivgdielfcreaqapivaitgsngkstvttlvgemakaagvnvgvggniglpalmllddecelyvlelssfqlettsslqavaatilnvtedhmdrypfglqqyraaklriyenakvcvvnaddaltmpirgadercvsfgvnmgdyhlnhqqgetwlrvkgekvlnvkemklsgqhnytnalaalaladaaglprasslkalttftglphrfevvlehngvrwindskatnvgsteaalnglhvdgtlhlllggdgksadfsplarylngdnvrlycfgrdgaqlaalrpevaeqtetmeqamrllaprvqpgdmvllspacasldqfknfeqrgnefarlakelg]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=murD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=murD]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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A carbamylated lysine residue is present in the active site.  MurD also catalyses the synthesis of adenosine 5'-tetraphosphate.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

murD

Gene Synonym(s)

ECK0089, b0088, JW0086[1], JW0086

Product Desc.

UDP-NACMURALA-GLU-LIG[2][3]

D-glutamic acid adding enzyme; UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase[4]

Product Synonyms(s)

UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase[1], B0088[2][1], MurD[2][1] , ECK0089, JW0086, b0088

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): mraZW-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ[2]

Regulation/Activity
Quick Links



        

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Notes

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A carbamylated lysine residue is present in the active site. MurD also catalyses the synthesis of adenosine 5'-tetraphosphate.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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