nirB:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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{|   id="K49aeee234b256"  class=" tableEdit New_Quickview_Table"   


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!align=left {{table_heading_style}} |Standard Name
!align=left {{table_heading_style}} |Standard Name
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''nirB''  
''nirB''
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK3353, b3365, JW3328''<ref name='LIB:Riley_2006'/>
''ECK3353, b3365, JW3328''<ref name='LIB:Riley_2006'/>, JW3328''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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nitrite reductase, large subunit, NAD(P)H-binding<ref name='LIB:Riley_2006'/>, B3365<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NirB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''nitrite reductase, large subunit, NAD(P)H-binding<ref name='LIB:Riley_2006'/>, B3365<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, NirB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3353, JW3328, b3365''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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'''Molecular Function'''
<GO_nr />
* GO:0005506 iron ion binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0020037 heme binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0050660 FAD binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0050661 NADP binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
* GO:0051539 4 iron, 4 sulfur cluster binding ([http://www.geneontology.org/GO.evidence.shtml IDA])
'''Biological Process'''
* GO:0009061 anaerobic respiration ([http://www.geneontology.org/GO.evidence.shtml IEP])
'''Cellular Component'''
* GO:0009344 nitrite reductase complex (NAD(P)H) ([http://www.geneontology.org/GO.evidence.shtml IDA])
 
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=nirB&loc=MG1655:3492033..3494576,W3110:4146405..4143862,REL606:3421916..3424459,DH10B:3589778..3592321 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3589778&end=3592321&gene=nirB&aa=mskvrlaiigngmvghrfiedlldksdaanfditvfceepriaydrvhlssyfshhtaeelslvregfyekhgikvlvgeraitinrqekvihssagrtvfydklimatgsypwippikgsdtqdcfvyrtiedlnaiescarrskrgavvgggllgleaagalknlgiethviefapmlmaeqldqmggeqlrrkiesmgvrvhtskntleivqegvearktmrfadgselevdfivfstgirprdklatqcgldvaprggivindscqtsdpdiyaigecaswnnrvfglvapgykmaqvavdhilgsenafegadlsaklkllgvdvggigdahgrtpgarsyvyldeskeiykrlivsednktllgavlvgdtsdygnllqlvlnaielpenpdslilpahsgsgkpsigvdklpdsaqicscfdvtkgdliaainkgchtvaalkaetkagtgcggciplvtqvlnaelakqgievnnnlcehfaysrqelfhlirvegiktfeellakhgkgygcevckptvgsllascwneyilkpehtplqdsndnflaniqkdgtysviprspggeitpeglmavgriarefnlytkitgsqrlamfgaqkddlpeiwrqlieagfetghayakalrmaktcvgstwcrygvgdsvglgvelenrykgirtphkmkfgvsgctrecseaqgkdvgiiatekgwnlyvcgnggmkprhadllaadidretlikyldrfmmfyirtadkltrtapwlenleggidylkaviiddklglnahleeemarlreavlcewtetvntpsaqtrfkhfinsdkrdpnvqmvpereqhrpatpyeripvtlvedna Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nirB+AND+escherichia+coli Pubmed(nirB)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=nirB Textpresso(nirB)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=nirB&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10653]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000646&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=nirB&loc=MG1655%3A3492033..3494576,W3110%3A4146405..4143862,REL606%3A3421916..3424459,DH10B%3A3589778..3592321,BW2952%3A3379190..3381733]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3379190&end=3381733&gene=nirB&aa=mskvrlaiigngmvghrfiedlldksdaanfditvfceepriaydrvhlssyfshhtaeelslvregfyekhgikvlvgeraitinrqekvihssagrtvfydklimatgsypwippikgsdtqdcfvyrtiedlnaiescarrskrgavvgggllgleaagalknlgiethviefapmlmaeqldqmggeqlrrkiesmgvrvhtskntleivqegvearktmrfadgselevdfivfstgirprdklatqcgldvaprggivindscqtsdpdiyaigecaswnnrvfglvapgykmaqvavdhilgsenafegadlsaklkllgvdvggigdahgrtpgarsyvyldeskeiykrlivsednktllgavlvgdtsdygnllqlvlnaielpenpdslilpahsgsgkpsigvdklpdsaqicscfdvtkgdliaainkgchtvaalkaetkagtgcggciplvtqvlnaelakqgievnnnlcehfaysrqelfhlirvegiktfeellakhgkgygcevckptvgsllascwneyilkpehtplqdsndnflaniqkdgtysviprspggeitpeglmavgriarefnlytkitgsqrlamfgaqkddlpeiwrqlieagfetghayakalrmaktcvgstwcrygvgdsvglgvelenrykgirtphkmkfgvsgctrecseaqgkdvgiiatekgwnlyvcgnggmkprhadllaadidretlikyldrfmmfyirtadkltrtapwlenleggidylkaviiddklglnahleeemarlreavlcewtetvntpsaqtrfkhfinsdkrdpnvqmvpereqhrpatpyeripvtlvedna]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=nirB+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=nirB]]&nbsp;&nbsp;


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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

nirB

Gene Synonym(s)

ECK3353, b3365, JW3328[1], JW3328

Product Desc.

nitrite reductase, large subunit[2][3];

Component of dimer of large subunit of nitrite reductase[2][3]; nitrite reductase[2][3]

Nitrite reductase [NAD(P)H] subunit[4]

Product Synonyms(s)

nitrite reductase, large subunit, NAD(P)H-binding[1], B3365[2][1], NirB[2][1] , ECK3353, JW3328, b3365

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): nirBDC-cysG[2], OP00062, nirB, nirBDC

Regulation/Activity
Quick Links



        

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Notes

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References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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