oxc:Quickview: Difference between revisions

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{|   id="H49aeeef3c9e63" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[oxc:Gene|''oxc]]'' (synonyms: ''ECK2369, b2373, JW2370, yfdU'')<ref name='LIB:Riley_2006'/>
''oxc''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[oxc:Gene_Product(s)|Oxc product]]<ref name='LIB:Riley_2006'/>: predicted oxalyl-CoA decarboxylase product, B2373 product, YfdU product
''ECK2369, b2373, JW2370, yfdU''<ref name='LIB:Riley_2006'/>, yfdU''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted oxalyl-CoA decarboxylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted oxalyl-CoA decarboxylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Probable oxalyl-CoA decarboxylase, oxalate catabolism<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted oxalyl-CoA decarboxylase<ref name='LIB:Riley_2006'/>, B2373<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YfdU<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, Oxc<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2369, JW2370, yfdU, b2373''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:oxc|oxc]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:oxc|oxc]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=oxc&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7236]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003811&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=oxc&loc=MG1655%3A2489972..2488278,W3110%3A2497396..2495702,DH10B%3A2581737..2580043,BW2952%3A2374083..2375777]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2374083&end=2375777&gene=oxc&aa=msdqlqmtdgmhiivealkqnnidtiygvvgipvtdmarhaqaegiryigfrheqsagyaaaasgfltqkpgicltvsapgflngltalanatvngfpmimisgssdraivdlqqgdyeeldqmnaakpyakaafrvnqpqdlgialarairvsvsgrpggvyldlpanvlaatmekdealttivkvenpspallpcpksvtsaisllakaerpliilgkgaaysqadeqlrefiesaqipflpmsmakgiledthplsaaaarsfalanadvvmlvgarlnwllahgkkgwaadtqfiqldiepqeidsnrpiavpvvgdiassmqgmlaelkqntfttplvwrdilnihkqqnaqkmheklstdtqplnyfnalsavrdvlrenqdiylvnegantldnarniidmykprrrldcgtwgvmgigmgyaigasvtsgspvvaiegdsafgfsgmeieticrynlpvtivifnnggiyrgdgvdlsgagapsptdllhharydklmdafrgvgynvtttdelrhalttgiqsrkptiinvvidpaagtesghitklnpkqvagn]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=oxc+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=oxc]]&nbsp;&nbsp;


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{{Quickview_table_help}}
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<protect><!--Quickview_notes--></protect>
<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
Orthologous to O. formigenes Oxc.  EvgAS regulon. the frc-oxc-yfdVE operon is adjacent and convergent on evgAS.  Uninduced level is probably low since Lung et al. found no activity in E. coli host cells.  AFMB Structural Genomics target No. 73 (http://afmb.cnrs-mrs.fr/article171.html).<ref name='LIB:EcoGene'/>




Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

oxc

Gene Synonym(s)

ECK2369, b2373, JW2370, yfdU[1], yfdU

Product Desc.

predicted oxalyl-CoA decarboxylase[2][3]

Probable oxalyl-CoA decarboxylase, oxalate catabolism[4]

Product Synonyms(s)

predicted oxalyl-CoA decarboxylase[1], B2373[2][1], YfdU[2][1], Oxc[2][1] , ECK2369, JW2370, yfdU, b2373

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): oxc[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


Orthologous to O. formigenes Oxc. EvgAS regulon. the frc-oxc-yfdVE operon is adjacent and convergent on evgAS. Uninduced level is probably low since Lung et al. found no activity in E. coli host cells. AFMB Structural Genomics target No. 73 (http://afmb.cnrs-mrs.fr/article171.html).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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