pdhR:Quickview: Difference between revisions

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{|   id="D49aeef427c652"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[pdhR:Gene|''pdhR]]'' (synonyms: ''ECK0112, b0113, JW0109, yacB, aceC, genA, dcuA''')<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''pdhR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[pdhR:Gene_Product(s)|PdhR product]]<ref name='LIB:Riley_2006'/>: DNA-binding transcriptional dual regulator product, B0113 product, YacB product, GenA product
''ECK0112, b0113, JW0109, yacB, aceC, genA, dcuA'''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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PdhR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
PdhR transcriptional dual regulator<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Pyruvate dehydrogenase operon (pdhR-aceEF-lpd) repressor; autoregulatory; pyruvate relieves repression; monomeric<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''DNA-binding transcriptional dual regulator<ref name='LIB:Riley_2006'/>, B0113<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YacB<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, GenA<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PdhR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , aceC, ECK0112, genA, JW0109, yacB, b0113''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:pdhR-aceEF-lpdA|pdhR-aceEF-lpdA]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:pdhR-aceEF-lpdA|pdhR-aceEF-lpdA]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=pdhR&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11088]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001076&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=pdhR&loc=MG1655%3A122092..122856,W3110%3A122092..122856,DH10B%3A96196..96960,REL606%3A124896..125660,BW2952%3A122091..122855]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=122091&end=122855&gene=pdhR&aa=mayskirqpklsdvieqqleflilegtlrpgeklpperelakqfdvsrpslreaiqrleakglllrrqgggtfvqsslwqsfsdplvellsdhpesqydlletrhalegiaayyaalrstdedkerirelhhaielaqqsgdldaesnavlqyqiavteaahnvvllhllrcmepmlaqnvrqnfellysrremlplvsshrtrifeaimagkpeeareashrhlafieeilldrsreesrrerslrrleqrkn]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=pdhR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=pdhR]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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The N-terminus of overexpressed PdhR has been determined (Quail and Guest, 1995), indicating that the initial Met is removed. however, the native pdhR RBS was not used, so PdhR is not in the Verified Set, although this is probably the correct start. PdhR is a GntR-type DNA-binding transcriptional regulator.<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:47, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

pdhR

Gene Synonym(s)

ECK0112, b0113, JW0109, yacB, aceC, genA, dcuA'[1][2]

Product Desc.

PdhR transcriptional dual regulator[2][3]

Pyruvate dehydrogenase operon (pdhR-aceEF-lpd) repressor; autoregulatory; pyruvate relieves repression; monomeric[4]

Product Synonyms(s)

DNA-binding transcriptional dual regulator[1], B0113[2][1], YacB[2][1], GenA[2][1], PdhR[2][1] , aceC, ECK0112, genA, JW0109, yacB, b0113

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): pdhR-aceEF-lpdA[2]

Regulation/Activity
Quick Links



        

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Notes

[back to top]


The N-terminus of overexpressed PdhR has been determined (Quail and Guest, 1995), indicating that the initial Met is removed. however, the native pdhR RBS was not used, so PdhR is not in the Verified Set, although this is probably the correct start. PdhR is a GntR-type DNA-binding transcriptional regulator.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 2.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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