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{{Tab On|Quickview|speD}}{{Tab|Gene|speD}}{{Tab|Gene Product(s)|speD}}{{Tab|Expression|speD}}{{Tab|Evolution|speD}}{{Tab|On One Page|speD}}{{TabsBottom}}
{{Tab On|Quickview|speD}}{{Tab|Gene|speD}}{{Tab|Gene Product(s)|speD}}{{Tab|Expression|speD}}{{Tab|Evolution|speD}}{{Tab|On One Page|speD}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[speD:Gene|''speD]]'' (synonyms: ''ECK0119, b0120, JW0116'')<ref name='LIB:Riley_2006'/>
''speD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[speD:Gene_Product(s)|SpeD product, SpeD product]]<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>: S-adenosylmethionine decarboxylase<ref name='LIB:Riley_2006'/>, B0120<ref name='LIB:EcoCyc10.6'/>, SpeD<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:adenosylmethionine decarboxylase, &beta; complex|adenosylmethionine decarboxylase, &beta; complex]]<ref name='LIB:EcoCyc10.6'/>, [[:Category:Complex:adenosylmethionine decarboxylase|adenosylmethionine decarboxylase]]<ref name='LIB:EcoCyc10.6'/>
''ECK0119, b0120, JW0116''<ref name='LIB:Riley_2006'/>, JW0116''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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&beta; cleavage product of SpeD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
adenosylmethionine decarboxylase, proenzyme<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>
 


S-adenosylmethionine decarboxylase, spermidine biosynthesis; two subunits by cleavage: residues 1-111 are the beta chain and 112-264 are the alpha chain (153 aa)<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''S-adenosylmethionine decarboxylase<ref name='LIB:Riley_2006'/>, B0120<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0119, JW0116, b0120''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:txn_units:yacC-speED|yacC-speED]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:yacC-speED|yacC-speED]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=speD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG10962]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120000951&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=speD&loc=MG1655%3A135582..134788,W3110%3A135582..134788,DH10B%3A109686..108892,REL606%3A138385..137591,BW2952%3A134787..135581]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=134787&end=135581&gene=speD&aa=mkklklhgfnnltkslsfciydicyaktaeerdgyiayidelynanrlteilsetcsiiganilniarqdyepqgasvtilvseepvdpklidktehpgplpetvvahldkshicvhtypeshpegglctfradievstcgvisplkalnylihqlesdivtidyrvrgftrdingmkhfidheinsiqnfmsddmkalydmvdvnvyqenifhtkmllkefdlkhymfhtkpedltdserqeitaalwkemreiyygrnmpav]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=speD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=speD]]&nbsp;&nbsp;
 
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==Notes==
===Notes===
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Paraquat toxicity observed in cells deficient in spermidine.  The N-terminus of alpha chain, Ser112 is modified to pyrivic acid.<ref name='LIB:EcoGene'/>
 




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==References==
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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

speD

Gene Synonym(s)

ECK0119, b0120, JW0116[1], JW0116

Product Desc.

adenosylmethionine decarboxylase, proenzyme[2][3]

S-adenosylmethionine decarboxylase, spermidine biosynthesis; two subunits by cleavage: residues 1-111 are the beta chain and 112-264 are the alpha chain (153 aa)[4]

Product Synonyms(s)

S-adenosylmethionine decarboxylase[1], B0120[2][1] , ECK0119, JW0116, b0120

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yacC-speED[2]

Regulation/Activity
Quick Links



        

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Notes

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Paraquat toxicity observed in cells deficient in spermidine. The N-terminus of alpha chain, Ser112 is modified to pyrivic acid.[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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