queD:Quickview: Difference between revisions

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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ygcM, ECK2760, b2765, JW2735, ptpS'', sscR<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>
''ygcM, ECK2760, b2765, JW2735, ptpS'', sscR<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc11.1'/><ref name='LIB:EcoCyc10.6'/>, sscR''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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6-pyruvoyl tetrahydrobiopterin synthase (PTPS)<ref name='LIB:Riley_2006'/>, B2765<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SscR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PtpS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''6-pyruvoyl tetrahydrobiopterin synthase (PTPS)<ref name='LIB:Riley_2006'/>, B2765<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, SscR<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgcM<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, PtpS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2760, JW2735, sscR, ygcM, b2765''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://porteco.org/AjaxSearch.jsp?searchString=sscR&s=search PortEco search(sscR)]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_dna.php?gene=sscR&loc=MG1655:2890236..2890601,W3110:2890870..2891235,DH10B:2982778..2983143,BW2952:2776048..2776413 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2776048&end=2776413&gene=sscR&aa=mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelkaafkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrge Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sscR+AND+escherichia+coli Pubmed(sscR)]&nbsp;&nbsp;&nbsp; [http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sscR Textpresso(sscR)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=sscR&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=sscR&loc=MG1655%3A2890236..2890601,W3110%3A2890870..2891235,DH10B%3A2982778..2983143,BW2952%3A2776048..2776413]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2776048&end=2776413&gene=sscR&aa=mmsttlfkdftfeaahrlphvpeghkcgrlhghsfmvrleitgevdphtgwiidfaelkaafkptyerldhhylndipglenptsevlakwiwdqvkpvvpllsavmvketctagciyrge]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=sscR+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=sscR]]&nbsp;&nbsp;


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Latest revision as of 21:46, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

queD

Gene Synonym(s)

ygcM, ECK2760, b2765, JW2735, ptpS, sscR[1][2][3], sscR

Product Desc.

6-pyruvoyl tetrahydropterin synthase[3][2]

6-pyruvoyl tetrahydrobiopterin synthase (PTPS); also has novel sepiapterin side chain releasing (SSCR) activity, producing 7,8-dihydropterin; may be involved in queuosine biosynthesis[4]

Product Synonyms(s)

6-pyruvoyl tetrahydrobiopterin synthase (PTPS)[1], B2765[3][1], SscR[3][1], YgcM[3][1], PtpS[3][1] , ECK2760, JW2735, sscR, ygcM, b2765

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygcM[3]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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The B. subtilis sscR(queD) ortholog is involved in queuosine preQ0 synthesis (Reader, 2004).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 3.2 3.3 3.4 3.5 3.6 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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