ubiD:Quickview: Difference between revisions

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{|   id="O49b0279d18398"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ubiD:Gene|''ubiD]]'' (synonyms: ''ECK3835, b3843, JW3819, yigC, yigY'')<ref name='LIB:Riley_2006'/>
''ubiD''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ubiD:Gene_Product(s)|UbiD product]]<ref name='LIB:Riley_2006'/>: 3-octaprenyl-4-hydroxybenzoate decarboxylase product, YigY product, YigC product, B3843 product
''ECK3835, b3843, JW3819, yigC, yigY''<ref name='LIB:Riley_2006'/>, yigY''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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3-octaprenyl-4-hydroxybenzoate decarboxylase monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
3-octaprenyl-4-hydroxybenzoate decarboxylase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:3-octaprenyl-4-hydroxybenzoate decarboxylase|3-octaprenyl-4-hydroxybenzoate decarboxylase]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:3-octaprenyl-4-hydroxybenzoate decarboxylase|3-octaprenyl-4-hydroxybenzoate decarboxylase]]<ref name='LIB:EcoCyc11.1'/>


3-octaprenyl-4-hydroxybenzoate carboxylyase; ubiquinone biosynthesis, third step; UbiX isozyme<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''3-octaprenyl-4-hydroxybenzoate decarboxylase<ref name='LIB:Riley_2006'/>, YigY<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YigC<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, UbiD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B3843<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK3835, JW3819, yigC, yigY, b3843''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ubiD|ubiD]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ubiD|ubiD]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ubiD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG11396]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120001363&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ubiD&loc=MG1655%3A4023011..4024504,W3110%3A3611693..3610200,REL606%3A4003459..4004952,DH10B%3A4121931..4123424,BW2952%3A3912680..3914173]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=3912680&end=3914173&gene=ubiD&aa=mdamkyndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlcnlfgtpkrvamgmgqedvsalrevgkllaflkepeppkgfrdlfdklpqfkqvlnmptkrlrgapcqqkivsgddvdlnripimtcwpedaaplitwgltvtrgphkerqnlgiyrqqligknklimrwlshrggaldyqewcaahpgerfpvsvalgadpatilgavtpvpdtlseyafagllrgtktevvkcisndlevpasaeivlegyieqgetapegpygdhtgyynevdsfpvftvthitqredaiyhstytgrppdepavlgvalnevfvpilqkqfpeivdfylppegcsyrlavvtikkqyaghakrvmmgvwsflrqfmytkfvivcdddvnardwndviwaittrmdpardtvlventpidyldfaspvsglgskmgldatnkwpgetqrewgrpikkdpdvvahidaiwdelaifnngksa]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ubiD+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ubiD]]&nbsp;&nbsp;
 
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<protect><!--Quickview_notes--></protect>
===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
AFMB Structural Genomics target No. 3 (http://afmb.cnrs-mrs.fr/article171.html)<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:45, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ubiD

Gene Synonym(s)

ECK3835, b3843, JW3819, yigC, yigY[1], yigY

Product Desc.

3-octaprenyl-4-hydroxybenzoate decarboxylase[2][3];

Component of 3-octaprenyl-4-hydroxybenzoate decarboxylase[3]

3-octaprenyl-4-hydroxybenzoate carboxylyase; ubiquinone biosynthesis, third step; UbiX isozyme[4]

Product Synonyms(s)

3-octaprenyl-4-hydroxybenzoate decarboxylase[1], YigY[2][1], YigC[2][1], UbiD[2][1], B3843[2][1] , ECK3835, JW3819, yigC, yigY, b3843

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ubiD[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


AFMB Structural Genomics target No. 3 (http://afmb.cnrs-mrs.fr/article171.html)[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 1.4 1.5 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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