ybiS:Quickview: Difference between revisions

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Latest revision as of 21:44, 27 May 2013

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Quickview

Standard Name	ybiS
Gene Synonym(s)	ECK0809, b0819, JW0803^[1], JW0803
Product Desc.	conserved protein^[2]^[3] L,D-transpeptidase linking Lpp to murein, periplasmic^[4]
Product Synonyms(s)	conserved protein^[1], B0819^[2]^[1], YbiS^[2]^[1] , ECK0809, JW0803, b0819
Function from GO	<GO_nr />
Knock-Out Phenotype
Regulation/Expression	transcription unit(s): ybiS^[2]
Regulation/Activity
Quick Links
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Notes

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ErfK family.^[4]

References

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↑ ^1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
↑ ^2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
↑ ^4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[LIB:Riley_2006-1] 1.0 ^1.1 ^1.2 ^1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)

[LIB:EcoCyc10.6-2] 2.0 ^2.1 ^2.2 ^2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoCyc11.1-3] EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7

[LIB:EcoGene-4] 4.0 ^4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.

[1]

[2]

[3]

[4]

@@ Line 23: / Line 23: @@
 *   ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **
 *
-****************************************************************************************** -->{{Quickview_table_help}}
+****************************************************************************************** -->
-{|  id="Q49b02ae406b7f"  class=" tableEdit New_Quickview_Table"
+{|   id="Q49b02ae406b7f"  class=" tableEdit New_Quickview_Table"
 |-
 !align=left {{table_heading_style}} |Standard Name
 ||
 ''ybiS''
 |-
 !align=left {{table_heading_style}} |Gene Synonym(s)
 ||
-''ECK0809, b0819, JW0803''<ref name='LIB:Riley_2006'/>
+''ECK0809, b0819, JW0803''<ref name='LIB:Riley_2006'/>, JW0803''
 |-
 !align=left {{table_heading_style}} |Product Desc.
@@ Line 43: / Line 43: @@
 !align=left {{table_heading_style}} |Product Synonyms(s)
 ||
-conserved protein<ref name='LIB:Riley_2006'/>, B0819<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbiS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>
+''conserved protein<ref name='LIB:Riley_2006'/>, B0819<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YbiS<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK0809, JW0803, b0819''
 |-
 !align=left {{table_heading_style}} |Function from GO
 ||
-'''Molecular Function'''
+<GO_nr />
-* GO:0008954 peptidoglycan synthetase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
-* GO:0016755 transferase activity, transferring amino-acyl groups ([http://www.geneontology.org/GO.evidence.shtml IMP])
-* GO:0016807 cysteine-type carboxypeptidase activity ([http://www.geneontology.org/GO.evidence.shtml IMP])
-'''Biological Process'''
-* GO:0010382 cellular cell wall metabolic process ([http://www.geneontology.org/GO.evidence.shtml IMP])
-* GO:0018104 peptidoglycan-protein cross-linking ([http://www.geneontology.org/GO.evidence.shtml IMP])
-* GO:0043164 Gram-negative-bacterium-type cell wall biogenesis ([http://www.geneontology.org/GO.evidence.shtml IMP])
 |-
 !align=left {{table_heading_style}} |Knock-Out Phenotype
@@ Line 71: / Line 63: @@
 !align=left {{table_heading_style}} |Quick Links
 ||
-[http://ecoliwiki.net/tools/display_dna.php?gene=ybiS&loc=MG1655:854967..854047,W3110:856166..855246,DH10B:908895..907975,REL606:848369..847449 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=848369&end=847449&gene=ybiS&aa=mnmklktlfaaafavvgfcstasavtyplptdgsrlvgqnqvitipegntqpleyfaaeyqmglsnmmeanpgvdtflpkggtvlnipqqlilpdtvhegivinsaemrlyyypkgtntvivlpigigqlgkdtpinwttkverkkagptwtptakmhaeyraageplpavvpagpdnpmglyalyigrlyaihgtnanfgiglrvshgcvrlrnedikflfekvpvgtrvqfidepvkattepdgsryievhnplstteaqfegqeivpitltksvqtvtgqpdvdqvvldeaiknrsgmpvrln Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybiS+AND+escherichia+coli Pubmed(ybiS)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/2.1/ecoli/search?searchstring=ybiS Textpresso(ybiS)]
+[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ybiS&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G6422]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120003022&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ybiS&loc=MG1655%3A854967..854047,W3110%3A856166..855246,DH10B%3A908895..907975,REL606%3A848369..847449,BW2952%3A757015..757935]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=757015&end=757935&gene=ybiS&aa=mnmklktlfaaafavvgfcstasavtyplptdgsrlvgqnqvitipegntqpleyfaaeyqmglsnmmeanpgvdtflpkggtvlnipqqlilpdtvhegivinsaemrlyyypkgtntvivlpigigqlgkdtpinwttkverkkagptwtptakmhaeyraageplpavvpagpdnpmglyalyigrlyaihgtnanfgiglrvshgcvrlrnedikflfekvpvgtrvqfidepvkattepdgsryievhnplstteaqfegqeivpitltksvqtvtgqpdvdqvvldeaiknrsgmpvrln]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ybiS+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ybiS]]&nbsp;&nbsp;
 |- class="tableEdit_footer"

ybiS:Quickview: Difference between revisions

Latest revision as of 21:44, 27 May 2013

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