cdgR:Quickview: Difference between revisions

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{{Tab On|Quickview|ydiV}}{{Tab|Gene|ydiV}}{{Tab|Gene Product(s)|ydiV}}{{Tab|Expression|ydiV}}{{Tab|Evolution|ydiV}}{{Tab|On One Page|ydiV}}{{TabsBottom}}
{{Tab On|Quickview|cdgR}}{{Tab|Gene|cdgR}}{{Tab|Gene Product(s)|cdgR}}{{Tab|Expression|cdgR}}{{Tab|Evolution|cdgR}}{{Tab|On One Page|cdgR}}{{TabsBottom}}
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ydiV:Gene|''ydiV]]'' (synonyms: ''ECK1705, b1707, JW1697'')<ref name='LIB:Riley_2006'/>
''cdgR''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ydiV:Gene_Product(s)|YdiV product]]<ref name='LIB:Riley_2006'/>: conserved protein product, B1707 product
''ECK1705, b1707, JW1697''<ref name='LIB:Riley_2006'/>, ydiV, JW1697''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
conserved protein<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Putative cyclic-di-GMP phosphodiesterase, function unknown; mutation decreases cAMP levels in an sdiA mutant; pheromone AI-1-responsive gene<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''conserved protein<ref name='LIB:Riley_2006'/>, B1707<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YdiV<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , CdgR, ECK1705, JW1697, b1707''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ydiV|ydiV]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ydiV|ydiV]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=cdgR&s=search]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=cdgR&loc=MG1655%3A1790044..1789331,W3110%3A1793734..1793021,DH10B%3A1880615..1879902,REL606%3A1769117..1768575,BW2952%3A1681390..1682103]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=1681390&end=1682103&gene=cdgR&aa=mkiflenlyhsdcyflpirdnqqvlvgvelithfssedgtvriptsrviaqlteeqhwqlfseqlellkscqhffiqhklfawlnltpqvatlllerdnyagellkypfiellinenyphlnegkdnrgllslsqvyplvlgnlgagnstmkavfdglftrvmldksfiqqqithrsfepfiraiqaqispccnciiaggidtaeilaqitpfdfhalqgclwpavpinqittlvqr]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=cdgR+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=cdgR]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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YdiV contains a cyclic-di-GMP phosphodiesterase EAL domain. Extracellular AI-1 stimulates ydiV expression in an SdiA-dependent manner (Zhou, 2008). An sdiA ydiV double mutant has twofold reduced cAMP levels than inhibits quorum sensing system 2 (Zhou, 2008).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:42, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

cdgR

Gene Synonym(s)

ECK1705, b1707, JW1697[1], ydiV, JW1697

Product Desc.

conserved protein[2][3]

Putative cyclic-di-GMP phosphodiesterase, function unknown; mutation decreases cAMP levels in an sdiA mutant; pheromone AI-1-responsive gene[4]

Product Synonyms(s)

conserved protein[1], B1707[2][1], YdiV[2][1] , CdgR, ECK1705, JW1697, b1707

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ydiV[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


YdiV contains a cyclic-di-GMP phosphodiesterase EAL domain. Extracellular AI-1 stimulates ydiV expression in an SdiA-dependent manner (Zhou, 2008). An sdiA ydiV double mutant has twofold reduced cAMP levels than inhibits quorum sensing system 2 (Zhou, 2008).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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