yfjD:Quickview: Difference between revisions

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*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
*  ** PLEASE DON'T EDIT THIS TABLE DIRECTLY.  Use the edit table link under the table. **  
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{|  id="L49b02ff4b5418"  class=" tableEdit New_Quickview_Table"   
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!align=left {{table_heading_style}} |Gene Synonym(s)
!align=left {{table_heading_style}} |Gene Synonym(s)
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''ECK2609, b4461, JW5415, ypjE, b2612 (obsolete), b2613 (obsolete)''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>
''ECK2609, b4461, JW5415, ypjE, b2612 (obsolete), b2613 (obsolete)''<ref name='LIB:Riley_2006'/><ref name='LIB:EcoCyc10.6'/>, corB, corF''
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!align=left {{table_heading_style}} |Product Desc.
!align=left {{table_heading_style}} |Product Desc.
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!align=left {{table_heading_style}} |Product Synonyms(s)
!align=left {{table_heading_style}} |Product Synonyms(s)
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predicted inner membrane protein<ref name='LIB:Riley_2006'/>, YfjD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4461<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YpjE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>  
''predicted inner membrane protein<ref name='LIB:Riley_2006'/>, YfjD<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, B4461<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YpjE<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , corB, corF, ECK2609, JW5415, ypjE, b4461''
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!align=left {{table_heading_style}} |Function from GO
!align=left {{table_heading_style}} |Function from GO
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!align=left {{table_heading_style}} |Quick Links
!align=left {{table_heading_style}} |Quick Links
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[http://ecoliwiki.net/tools/display_dna.php?gene=yfjD&loc=MG1655:2746886..2748082,W3110:2747520..2748716,REL606:2670159..2671355,DH10B:2838561..2839847 DNA display]&nbsp;&nbsp;&nbsp; [http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2838561&end=2839847&gene=yfjD&aa=miiiliimvvisayfsgsetgmmtlnryrlrhmakqgnrsakrvekllrkpdrlislvlignnlvnilasalgtivgmrlygdagvaiatgvltfvvlvfaevlpktiaalypekvaypssfllaplqilmmplvwllnaitrmlmrmmgiktdivvsgslskeelrtivhesrsqisrrnqdmllsvldlekmtvddimvprseiigidinddwksilrqlshsphgrivlyrdslddaismlrvreawrlmsekkeftketmlraadeiyfvpegtplstqlvkfqrnkkkvglvvneygdiqglvtvedileeivgdfttsmsptlaeevtpqndgsviidgtanvreinkafnwhlpeddartvngvilealeeipvagtrvrigeydidildvqdnmikqvkvfpvkplresvae Protein display]&nbsp;&nbsp;&nbsp; [http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yfjD+AND+escherichia+coli Pubmed(yfjD)]&nbsp;&nbsp;&nbsp; [http://trimer.tamu.edu/cgi-bin/textpresso/dev/search?q=yfjD Textpresso(yfjD)]
[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=yfjD&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=EG12442]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120002295&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=yfjD&loc=MG1655%3A2746886..2748082,W3110%3A2747520..2748716,REL606%3A2670159..2671355,DH10B%3A2838561..2839847,BW2952%3A2632632..2633894]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2632632&end=2633894&gene=yfjD&aa=miiiliimvvisayfsgsetgmmtlnryrlrhmakqgnrsakrvekllrkpdrlislvlignnlvnilasalgtivgmrlygdagvaiatgvltfvvlvfaevlpktiaalypekvaypssfllaplqilmmplvwllnaitrmlmrmmgiktdivvsgslskeelrtivhesrsqisrrnqdmllsvldlekmtvddimvprseiigidinddwksilrqlshsphgrivlyrdslddaismlrvreawrlmsekkeftketmlraadeiyfvpegtplstqlvkfqrnkkkvglvvneygdiqglvtvedileeivgdfttsmsptlaeevtpqndgsviidgtanvreinkafnwhlpeddartvngvilealeeipvagtrvrigeydidildvqdnmikqvkvfpvkplresvae]]&nbsp;&nbsp; [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=yfjD+AND+escherichia+coli]]&nbsp;&nbsp; [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=yfjD]]&nbsp;&nbsp;


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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

yfjD

Gene Synonym(s)

ECK2609, b4461, JW5415, ypjE, b2612 (obsolete), b2613 (obsolete)[1][2], corB, corF

Product Desc.

predicted inner membrane protein[2][3]

Function unknown; four transmembrane helices predicted; possibly involved in Co2+ resistance[4]

Product Synonyms(s)

predicted inner membrane protein[1], YfjD[2][1], B4461[2][1], YpjE[2][1] , corB, corF, ECK2609, JW5415, ypjE, b4461

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): yfjD[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

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corB and corF were previously thought to be two separate genes in Salmonella due to a sequencing error (in Genbank AF130857). The role of yfjD in E. coli has not been directly determined. The most likely predicted start codon is a CTG, despite the fact this is the only CTG start annotated in EcoGene.[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 1.4 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 2.4 2.5 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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