ygeG:Quickview: Difference between revisions
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{| | {| id="F49b030926b0fb" class=" tableEdit New_Quickview_Table" | ||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Standard Name | ||
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''ygeG'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Gene Synonym(s) | ||
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''ECK2849, b2851, JW2819''<ref name='LIB:Riley_2006'/>, JW2819'' | |||
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!align=left {{table_heading_style}} | | !align=left {{table_heading_style}} |Product Desc. | ||
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predicted chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | predicted chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/> | ||
Putative secretion chaperone, part of T3SS PAI ETT2 remnant<ref name='LIB:EcoGene'/> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | !align=left {{table_heading_style}} |Product Synonyms(s) | ||
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''predicted chaperone<ref name='LIB:Riley_2006'/>, B2851<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgeG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2849, JW2819, b2851'' | |||
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!align=left {{table_heading_style}} |Function from GO | |||
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<GO_nr /> | |||
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!align=left {{table_heading_style}} |Knock-Out Phenotype | |||
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!align=left {{table_heading_style}} |Regulation/Expression | !align=left {{table_heading_style}} |Regulation/Expression | ||
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transcription unit(s): [[:Category:Txn_unit:ygeG|ygeG]]<ref name='LIB:EcoCyc10.6'/> | transcription unit(s): [[:Category:Txn_unit:ygeG|ygeG]]<ref name='LIB:EcoCyc10.6'/> | ||
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!align=left {{table_heading_style}} |Quick Links | |||
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygeG&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7471]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004034&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygeG&loc=MG1655%3A2989290..2989781,W3110%3A2989924..2990415,DH10B%3A3083160..3083651,BW2952%3A2876438..2876929]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2876438&end=2876929&gene=ygeG&aa=mstetieifnnsdewanqlkhalskgenlallhgltpdildriyayafdyhekgnitdaeiyykflciyafenheylkdfasvcqpkkkyqqaydlyklsynyfpyddysviyrmgqcqigaknidnamqcfyhiinnceddsvkskaqayiellndnsedng]] [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygeG+AND+escherichia+coli]] [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygeG]] | |||
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|[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id= | |<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=bc145ea147f7e36caf09c1bfeed4ee9d.7460.F49b030926b0fb&page=7460&pagename={{FULLPAGENAMEE}}&type=1&template=New_Quickview_Table edit table]</span> || | ||
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{{Quickview_table_help}} | {{Quickview_table_help}} | ||
<protect><!--Quickview_notes--></protect> | <protect><!--Quickview_notes--></protect> | ||
===Notes=== | ===Notes=== | ||
{{BacktoTop}} | {{BacktoTop}} | ||
This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving 10 kb of the presumably non-functional T3SS ETT2 remaining. YgeG is homolgous to secretion-associated chaperones SicA (Salmonella), SycD (Yersinia) and IpgC (Shigella).<ref name='LIB:EcoGene'/> | |||
Latest revision as of 21:41, 27 May 2013
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| Quickview | Gene | Gene Product(s) | Expression | Evolution | On One Page |
| References | Suggestions |
| Standard Name |
ygeG |
|---|---|
| Gene Synonym(s) |
ECK2849, b2851, JW2819[1], JW2819 |
| Product Desc. |
Putative secretion chaperone, part of T3SS PAI ETT2 remnant[4] |
| Product Synonyms(s) |
predicted chaperone[1], B2851[2][1], YgeG[2][1] , ECK2849, JW2819, b2851 |
| Function from GO |
<GO_nr /> |
| Knock-Out Phenotype | |
| Regulation/Expression | |
| Regulation/Activity | |
| Quick Links |
|
| edit table |
See Help:Quickview for help with entering information in the Quickview table.
Notes
This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving 10 kb of the presumably non-functional T3SS ETT2 remaining. YgeG is homolgous to secretion-associated chaperones SicA (Salmonella), SycD (Yersinia) and IpgC (Shigella).[4]
References
- ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
- ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
- ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.