ygeG:Quickview: Difference between revisions

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{|{{Prettytable}}
{|   id="F49b030926b0fb"  class=" tableEdit New_Quickview_Table" 
 
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!{{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ygeG:Gene|''ygeG]]'' (synonyms: ''ECK2849, b2851, JW2819'')<ref name='LIB:Riley_2006'/>
''ygeG''
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!{{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ygeG:Gene_Product(s)|YgeG product]]<ref name='LIB:Riley_2006'/>: predicted chaperone product, B2851 product
''ECK2849, b2851, JW2819''<ref name='LIB:Riley_2006'/>, JW2819''
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!{{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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predicted chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
predicted chaperone<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>


Putative secretion chaperone, part of T3SS PAI ETT2 remnant<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Product Synonyms(s)
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''predicted chaperone<ref name='LIB:Riley_2006'/>, B2851<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgeG<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2849, JW2819, b2851''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!{{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Knock-Out Phenotype
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|-
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!{{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ygeG|ygeG]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ygeG|ygeG]]<ref name='LIB:EcoCyc10.6'/>  
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!{{table_heading_style}} |Regulation/Activity
!align=left {{table_heading_style}} |Regulation/Activity
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygeG&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7471]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004034&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygeG&loc=MG1655%3A2989290..2989781,W3110%3A2989924..2990415,DH10B%3A3083160..3083651,BW2952%3A2876438..2876929]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2876438&end=2876929&gene=ygeG&aa=mstetieifnnsdewanqlkhalskgenlallhgltpdildriyayafdyhekgnitdaeiyykflciyafenheylkdfasvcqpkkkyqqaydlyklsynyfpyddysviyrmgqcqigaknidnamqcfyhiinnceddsvkskaqayiellndnsedng]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygeG+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygeG]]&nbsp;&nbsp;
 
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===Notes===
===Notes===
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This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving 10 kb of the presumably non-functional T3SS ETT2 remaining. YgeG is homolgous to secretion-associated chaperones SicA (Salmonella), SycD (Yersinia) and IpgC (Shigella).<ref name='LIB:EcoGene'/>




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==References==
==References==
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Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ygeG

Gene Synonym(s)

ECK2849, b2851, JW2819[1], JW2819

Product Desc.

predicted chaperone[2][3]

Putative secretion chaperone, part of T3SS PAI ETT2 remnant[4]

Product Synonyms(s)

predicted chaperone[1], B2851[2][1], YgeG[2][1] , ECK2849, JW2819, b2851

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygeG[2]

Regulation/Activity
Quick Links



        

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See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. 18 kb of ETT2 has been deleted from K-12, leaving 10 kb of the presumably non-functional T3SS ETT2 remaining. YgeG is homolgous to secretion-associated chaperones SicA (Salmonella), SycD (Yersinia) and IpgC (Shigella).[4]



References

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  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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