ygeX:Quickview: Difference between revisions

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{|   id="X49b030aaa6918" class=" tableEdit New_Quickview_Table"


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!align=left {{table_heading_style}} |Gene Name
!align=left {{table_heading_style}} |Standard Name
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[[ygeX:Gene|''ygeX]]'' (synonyms: ''ECK2867, b2871, JW2839'')<ref name='LIB:Riley_2006'/>
''ygeX''
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!align=left {{table_heading_style}} |Product(s)  
!align=left {{table_heading_style}} |Gene Synonym(s)
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[[ygeX:Gene_Product(s)|YgeX product]]<ref name='LIB:Riley_2006'/>: 2,3-diaminopropionate ammonia-lyase product, B2871 product
''ECK2867, b2871, JW2839''<ref name='LIB:Riley_2006'/>, JW2839''
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!align=left {{table_heading_style}} |Description
!align=left {{table_heading_style}} |Product Desc.
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2,3-diaminopropionate ammonia-lyase monomer<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>  
2,3-diaminopropionate ammonia-lyase<ref name='LIB:EcoCyc10.6'/><ref name='LIB:EcoCyc11.1'/>;


Component of [[:Category:Complex:2,3-diaminopropionate ammonia-lyase|2,3-diaminopropionate ammonia-lyase]]<ref name='LIB:EcoCyc11.1'/>
Component of [[:Category:Complex:2,3-diaminopropionate ammonia-lyase|2,3-diaminopropionate ammonia-lyase]]<ref name='LIB:EcoCyc11.1'/>


2,3-diaminopropionate ammonia lyase<ref name='LIB:EcoGene'/>
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!align=left {{table_heading_style}} |Knock-Out Phenotype
!align=left {{table_heading_style}} |Product Synonyms(s)
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''2,3-diaminopropionate ammonia-lyase<ref name='LIB:Riley_2006'/>, B2871<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/>, YgeX<ref name='LIB:EcoCyc10.6'/><ref name='LIB:Riley_2006'/> , ECK2867, JW2839, b2871''
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!align=left {{table_heading_style}} |Function from GO
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<GO_nr />
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!align=left {{table_heading_style}} |Knock-Out Phenotype
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!align=left {{table_heading_style}} |Regulation/Expression
!align=left {{table_heading_style}} |Regulation/Expression
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transcription unit(s): [[:Category:Txn_unit:ygeX|ygeX]]<ref name='LIB:EcoCyc10.6'/>  
transcription unit(s): [[:Category:Txn_unit:ygeX|ygeX]]<ref name='LIB:EcoCyc10.6'/>  
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!align=left {{table_heading_style}} |Quick Links
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[[File:porteco.png|link=http://porteco.org/AjaxSearch.jsp?searchString=ygeX&s=search]] [[File:EcoCyc.gif|link=http://biocyc.org/ECOLI/NEW-IMAGE?type=NIL&object=G7490]] [[File:regulondb.jpg|link=http://regulondb.ccg.unam.mx/gene?term=ECK120004053&organism=ECK12&format=jsp&type=gene ]] <br/><br/> [[File:dnadisplay.png|link=http://ecoliwiki.net/tools/display_dna.php?gene=ygeX&loc=MG1655%3A3005532..3006728,W3110%3A3006166..3007362,REL606%3A2893265..2894461,DH10B%3A3099402..3100598,BW2952%3A2892680..2893876]] [[File:proteindisplay.png|link=http://ecoliwiki.net/tools/display_protein.php?f=NC_000913&start=2892680&end=2893876&gene=ygeX&aa=msvfslkidiadnkffngetsplfsqsqaklarqfhqkiagyrptplcalddlanlfgvkkilvkdeskrfglnafkmlggayaiaqllcekyhldietlsfehlknaigekmtfatttdgnhgrgvawaaqqlgqnaviympkgsaqervdailnlgaecivtdmnyddtvrltmqhaqqhgwevvqdtawegytkiptwimqgyatladeaveqmremgvtpthvllqagvgamaggvlgylvdvyspqnlhsiivepdkadciyrsgvkgdivnvggdmatimaglacgepnplgweilrncatqfiscqdsvaalgmrvlgnpygndpriisgesgavglgvlaavhyhpqrqslmeklalnkdavvlvistegdtdvkhyrevvwegkhavap]]&nbsp;&nbsp;  [[File:pubmed.jpg|link=http://www.ncbi.nlm.nih.gov/sites/entrez?db=pubmed&cmd=Search&Term=ygeX+AND+escherichia+coli]]&nbsp;&nbsp;  [[File:textpresso.jpg|link=http://textpresso.tamu.edu/cgi-bin/textpresso/search?q=ygeX]]&nbsp;&nbsp;


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<protect><!--Quickview_notes--></protect>
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===Notes===
===Notes===
{{BacktoTop}}
{{BacktoTop}}
The N-terminus of the overexpressed protein has been sequenced, but the natural RBS was not used so it is not a Verified protein. the initial Met is cleaved.  The N-terminus of the native S. typhimurium YgeX has been Verified (Nagasawa et al., 1988).<ref name='LIB:EcoGene'/>




Latest revision as of 21:41, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
References Suggestions
Standard Name

ygeX

Gene Synonym(s)

ECK2867, b2871, JW2839[1], JW2839

Product Desc.

2,3-diaminopropionate ammonia-lyase[2][3];

Component of 2,3-diaminopropionate ammonia-lyase[3]

2,3-diaminopropionate ammonia lyase[4]

Product Synonyms(s)

2,3-diaminopropionate ammonia-lyase[1], B2871[2][1], YgeX[2][1] , ECK2867, JW2839, b2871

Function from GO

<GO_nr />

Knock-Out Phenotype
Regulation/Expression

transcription unit(s): ygeX[2]

Regulation/Activity
Quick Links



        

edit table

See Help:Quickview for help with entering information in the Quickview table.

Notes

[back to top]


The N-terminus of the overexpressed protein has been sequenced, but the natural RBS was not used so it is not a Verified protein. the initial Met is cleaved. The N-terminus of the native S. typhimurium YgeX has been Verified (Nagasawa et al., 1988).[4]



References

[back to top]


  1. ↑ 1.0 1.1 1.2 1.3 Riley, M. et al. (2006) Nucleic Acids Res 34:1-6 (corrected supplemental data from B. Wanner)
  2. ↑ 2.0 2.1 2.2 2.3 EcoCyc (release 10.6; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  3. ↑ 3.0 3.1 EcoCyc (release 11.1; 2007) Keseler, IM et al. (2005) Nucleic Acids Res. 33(Database issue):D334-7
  4. ↑ 4.0 4.1 EcoGene: Rudd, KE (2000) EcoGene: a genome sequence database for Escherichia coli K-12. Nucleic Acids Res 28:60-4.
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