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<noinclude>{{TabsTop}}
<noinclude>{{TabsTop}}
{{Tab|Quickview|gltP}}{{Tab|Gene|gltP}}{{Tab|Gene Product(s)|gltP}}{{Tab|Expression|gltP}}{{Tab On|Evolution|gltP}}{{Tab|On One Page|gltP}}{{TabsBottom}}
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==Homologs in Other Organisms==
==Homologs in Other Organisms==
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="W46ac15e809a0e"  class=" tableEdit Evolution_homologs_table" 
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|- {{table heading style}}
!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
From SHIGELLACYC  
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''E. coli'' O157
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GLTP
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From ECOO157CYC
 
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_418501&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_418501&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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==Families==
==Families==
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|- {{table_heading_style}}
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=118215 SUPERFAMILY:118215]
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|-  
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00375 PFAM:PF00375]
[http://pfam.janelia.org/family/PF00375 PF00375  Sodium:dicarboxylate symporter family]
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|-class='sortbottom'
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|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79..I46a0952416ec1&page=&pagename={{FULLPAGENAMEE}} edit table] || ||
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[[EcoCyc]]
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EcoCyc:EG10405
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
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EcoGene:EG10405
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120000398
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0400
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0013357
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==Links==
==Links==
{{Evolution_links_default}}
{{BacktoTop}}
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==References==
==References==
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in Shigella flexneri ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in Shigella flexneri ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027697 (score: 1.000; bootstrap: 99%)
  • ENSANGP00000021612 (score: 0.421)
  • ENSANGP00000027123 (score: 0.160)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000024287 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000018050 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010206 (score: 0.484)
  • ENSBTAP00000017953 (score: 0.426)
  • ENSBTAP00000016615 (score: 0.402)
  • ENSBTAP00000016762 (score: 0.388)
  • ENSBTAP00000025456 (score: 0.272)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024341 (score: 1.000; bootstrap: 100%)
  • WBGene00034793 (score: 0.408)
  • WBGene00028255 (score: 0.306)
  • WBGene00026282 (score: 0.306)
  • WBGene00027606 (score: 0.248)
  • WBGene00024821 (score: 0.224)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00001623 (score: 1.000; bootstrap: 100%)
  • WBGene00001620 (score: 0.417)
  • WBGene00001621 (score: 0.319)
  • WBGene00001624 (score: 0.289)
  • WBGene00001622 (score: 0.236)
  • WBGene00001625 (score: 0.173)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000003046 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000006242 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000004745 (score: 0.427)
  • ENSCAFP00000027598 (score: 0.422)
  • ENSCAFP00000010244 (score: 0.394)
  • ENSCAFP00000023841 (score: 0.386)
  • ENSCAFP00000028288 (score: 0.258)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000015374 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000011730 (score: 0.507)
  • ENSCINP00000001643 (score: 0.084)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-414 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-455 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3230 (score: 0.417)
  • ZDB-GENE-030131-2159 (score: 0.417)
  • ZDB-CDNA-040425-3053 (score: 0.411)
  • ZDB-CDNA-040425-1504 (score: 0.393)
  • ZDB-GENE-030131-7779 (score: 0.393)
  • ZDB-GENE-030616-566 (score: 0.295)
  • ZDB-CDNA-040718-244 (score: 0.058)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0026439 (score: 1.000; bootstrap: 100%)
  • FBgn0026438 (score: 0.227)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17658-PA (score: 1.000; bootstrap: 100%)
  • GA16330-PA (score: 0.219)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000005658 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000001020 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000000775 (score: 0.628)
  • ENSGALP00000017343 (score: 0.581)
  • ENSGALP00000016539 (score: 0.388)
  • ENSGALP00000012767 (score: 0.361)
  • ENSGALP00000014306 (score: 0.253)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000265113 (score: 1.000; bootstrap: 100%)
  • ENSP00000303623 (score: 1.000; bootstrap: 100%)
  • ENSP00000221742 (score: 0.613)
  • ENSP00000234256 (score: 0.455)
  • ENSP00000287857 (score: 0.403)
  • ENSP00000262352 (score: 0.390)
  • ENSP00000278379 (score: 0.380)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000000178 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000008151 (score: 0.408)
  • ENSMMUP00000005788 (score: 0.294)
  • ENSMMUP00000002315 (score: 0.288)
  • ENSMMUP00000009985 (score: 0.251)
  • ENSMMUP00000013455 (score: 0.167)
  • ENSMMUP00000029175 (score: 0.074)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000025454 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000011359 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000018100 (score: 0.588)
  • ENSMODP00000004049 (score: 0.410)
  • ENSMODP00000000586 (score: 0.393)
  • ENSMODP00000019226 (score: 0.375)
  • ENSMODP00000024743 (score: 0.363)

From Inparanoid:20070104

Mus musculus

  • MGI:99917 (score: 1.000; bootstrap: 100%)
  • MGI:105305 (score: 1.000; bootstrap: 100%)
  • MGI:1096331 (score: 0.616)
  • MGI:2135601 (score: 0.431)
  • MGI:2444087 (score: 0.400)
  • MGI:105083 (score: 0.397)
  • MGI:101931 (score: 0.377)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000028807 (score: 1.000; bootstrap: 99%)
  • ENSPTRP00000035480 (score: 0.391)
  • ENSPTRP00000006085 (score: 0.382)
  • ENSPTRP00000041631 (score: 0.197)
  • ENSPTRP00000001284 (score: 0.178)
  • ENSPTRP00000020582 (score: 0.112)
  • ENSPTRP00000019210 (score: 0.089)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022319 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000021455 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000009931 (score: 0.571)
  • ENSRNOP00000016557 (score: 0.403)
  • ENSRNOP00000007002 (score: 0.401)
  • ENSRNOP00000020272 (score: 0.397)
  • ENSRNOP00000046952 (score: 0.374)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000182450 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000157480 (score: 0.478)
  • NEWSINFRUP00000132702 (score: 0.467)
  • NEWSINFRUP00000164620 (score: 0.322)
  • NEWSINFRUP00000135542 (score: 0.310)
  • NEWSINFRUP00000139924 (score: 0.288)
  • NEWSINFRUP00000161628 (score: 0.285)
  • NEWSINFRUP00000177126 (score: 0.285)
  • NEWSINFRUP00000143486 (score: 0.284)
  • NEWSINFRUP00000167345 (score: 0.228)
  • NEWSINFRUP00000164715 (score: 0.206)
  • NEWSINFRUP00000177480 (score: 0.205)
  • NEWSINFRUP00000180372 (score: 0.188)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00014834001 (score: 1.000; bootstrap: 100%)
  • GSTENP00011666001 (score: 1.000; bootstrap: 100%)
  • GSTENP00014833001 (score: 0.800)
  • GSTENP00018793001 (score: 0.538)
  • GSTENP00021479001 (score: 0.434)
  • GSTENP00018207001 (score: 0.329)
  • GSTENP00006570001 (score: 0.277)
  • GSTENP00009151001 (score: 0.257)
  • GSTENP00013364001 (score: 0.233)
  • GSTENP00004302001 (score: 0.192)
  • GSTENP00027743001 (score: 0.160)
  • GSTENP00002653001 (score: 0.094)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000013404 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000047357 (score: 0.553)
  • ENSXETP00000017680 (score: 0.402)
  • ENSXETP00000025556 (score: 0.386)
  • ENSXETP00000019186 (score: 0.377)
  • ENSXETP00000016454 (score: 0.375)
  • ENSXETP00000030608 (score: 0.295)
  • ENSXETP00000045897 (score: 0.247)
  • ENSXETP00000039614 (score: 0.210)

From Inparanoid:20070104

Shigella flexneri

GLTP

From SHIGELLACYC

E. coli O157

GLTP

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:118215

Pfam (EcoliWiki Page)

PF00375 Sodium:dicarboxylate symporter family

EcoCyc

EcoCyc:EG10405

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10405

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000398

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0400

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0013357

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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