argH:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46ac10edc9dee"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="I46ac1114a9d9e"  class=" tableEdit Gene_accessions_table" 
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00206 PF00206  Lyase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=48557 SUPERFAMILY:48557]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00206 PFAM:PF00206]
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11444:SF3 PTHR11444:SF3]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00206 PFAM:PF00206]
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[[EcoCyc]]
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EcoCyc:EG11223
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11223
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001201
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1205
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012969
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000006856 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000027455 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G10920 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020375 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000015734 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000013026 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1152 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2084 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032076 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17268-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000004034 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000004053 (score: 0.839)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000354710 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000015581 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008034 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:88084 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000032888 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000001211 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YHR018C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC17734 (score: 1.000; bootstrap: 100%)
  • SPBC15393c (score: 0.589)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000148426 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00029954001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000006535 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

ARGH

From SHIGELLACYC

E. coli O157

ARGH

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00206 Lyase

Superfamily (EcoliWiki Page)

SUPERFAMILY:48557

Panther (EcoliWiki Page)

PTHR11444:SF3

PFAM (EcoliWiki Page)

PFAM:PF00206

EcoCyc

EcoCyc:EG11223

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11223

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001201

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1205

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012969

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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