bglB:Evolution: Difference between revisions

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From SHIGELLACYC  
From SHIGELLACYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00232 PFAM:PF00232]
[http://pfam.janelia.org/family/PF00232 PF00232 Glycosyl hydrolase family 1]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51445 SUPERFAMILY:51445]
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[[EcoCyc]]
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EcoCyc:EG10114
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10114
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000110
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0112
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0012169
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:37, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014637 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021767 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G36890 (score: 1.000; bootstrap: 99%)
  • AT1G26560 (score: 0.321)
  • AT5G54570 (score: 0.314)
  • AT3G18080 (score: 0.278)
  • AT5G44640 (score: 0.269)
  • AT2G44450 (score: 0.266)
  • AT5G42260 (score: 0.264)
  • AT5G24540 (score: 0.261)
  • AT3G18070 (score: 0.259)
  • AT5G24550 (score: 0.258)
  • AT3G60140 (score: 0.251)
  • AT2G44480 (score: 0.249)
  • AT3G60130 (score: 0.245)
  • AT2G25630 (score: 0.229)
  • AT2G44460 (score: 0.226)
  • AT1G61820 (score: 0.211)
  • AT3G60120 (score: 0.199)
  • AT2G44490 (score: 0.198)
  • AT1G51470 (score: 0.194)
  • AT1G61810 (score: 0.192)
  • AT1G47600 (score: 0.189)
  • AT4G21760 (score: 0.187)
  • AT4G27830 (score: 0.174)
  • AT2G32860 (score: 0.173)
  • AT1G75940 (score: 0.173)
  • AT1G02850 (score: 0.170)
  • AT4G22100 (score: 0.163)
  • AT3G21370 (score: 0.163)
  • AT3G62750 (score: 0.162)
  • AT1G66280 (score: 0.162)
  • AT4G27820 (score: 0.159)
  • AT5G28510 (score: 0.158)
  • AT3G03640 (score: 0.155)
  • AT3G09260 (score: 0.155)
  • AT5G25980 (score: 0.145)
  • AT1G60090 (score: 0.145)
  • AT1G66270 (score: 0.144)
  • AT1G52400 (score: 0.140)
  • AT3G62740 (score: 0.135)
  • AT2G44470 (score: 0.134)
  • AT1G45191 (score: 0.133)
  • AT5G26000 (score: 0.131)
  • AT1G51490 (score: 0.064)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020185 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000006868 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000027139 (score: 0.218)
  • ENSBTAP00000019297 (score: 0.194)
  • ENSBTAP00000018586 (score: 0.183)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037225 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017103 (score: 1.000; bootstrap: 100%)
  • WBGene00016848 (score: 0.756)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000025530 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000007651 (score: 0.295)
  • ENSCAFP00000024306 (score: 0.226)
  • ENSCAFP00000023599 (score: 0.195)
  • ENSCAFP00000009488 (score: 0.069)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010721 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000017340 (score: 0.284)
  • ENSCINP00000010375 (score: 0.195)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040718-233 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040718-260 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-050522-351 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050522-351 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0036659 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21974-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000020127 (score: 1.000; bootstrap: 86%)
  • ENSGALP00000027517 (score: 0.129)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000264162 (score: 1.000; bootstrap: 100%)
  • ENSP00000255481 (score: 0.119)
  • ENSP00000257408 (score: 0.115)
  • ENSP00000343490 (score: 0.074)
  • ENSP00000314501 (score: 0.061)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000016070 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000022434 (score: 0.123)
  • ENSMMUP00000022970 (score: 0.074)
  • ENSMMUP00000011579 (score: 0.073)
  • ENSMMUP00000007357 (score: 0.066)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000001160 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000000673 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000012038 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000025712 (score: 0.198)
  • ENSMODP00000012043 (score: 0.177)

From Inparanoid:20070104

Mus musculus

  • MGI:104576 (score: 1.000; bootstrap: 100%)
  • MGI:2183549 (score: 1.000; bootstrap: 100%)
  • MGI:1101771 (score: 0.191)
  • MGI:1932466 (score: 0.179)

From Inparanoid:20070104

Oryza gramene

  • Q8L7J2 (score: 0.345)
  • Q5N863 (score: 1.000; bootstrap: 99%)
  • Q5Z9Z0 (score: 0.336)
  • Q75I93 (score: 0.319)
  • Q7XKV2 (score: 0.317)
  • Q94HQ6 (score: 0.317)
  • Q7XFU8 (score: 0.317)
  • Q5QMT0 (score: 0.312)
  • Q42975 (score: 0.312)
  • Q7XKV5 (score: 0.311)
  • Q7XKV4 (score: 0.308)
  • Q40025 (score: 0.304)
  • Q75I94 (score: 0.292)
  • Q7F9K4 (score: 0.289)
  • Q7XSK0 (score: 0.277)
  • Q7XPY7 (score: 0.272)
  • Q53RI4 (score: 0.269)
  • Q7XSK2 (score: 0.264)
  • Q93ZK6 (score: 0.257)
  • Q93XR2 (score: 0.247)
  • Q84YK7 (score: 0.236)
  • Q9ZP27 (score: 0.235)
  • Q41761 (score: 0.231)
  • Q7EXZ4 (score: 0.229)
  • Q41290 (score: 0.224)
  • Q9FYS3 (score: 0.223)
  • Q53WW9 (score: 0.220)
  • P49235 (score: 0.220)
  • Q60DX8 (score: 0.219)
  • Q75IT1 (score: 0.210)
  • Q38786 (score: 0.205)
  • Q75IS8 (score: 0.181)
  • Q5JK35 (score: 0.176)
  • Q7EXZ5 (score: 0.155)
  • Q8RZL1 (score: 0.119)
  • Q6L597 (score: 0.101)
  • Q60DY5 (score: 0.077)
  • Q60DY1 (score: 0.062)
  • Q53NF0 (score: 0.058)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000021379 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000027525 (score: 0.178)
  • ENSPTRP00000009827 (score: 0.098)
  • ENSPTRP00000027469 (score: 0.089)
  • ENSPTRP00000012316 (score: 0.056)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000004908 (score: 1.000; bootstrap: 98%)
  • ENSRNOP00000001449 (score: 0.116)
  • ENSRNOP00000012308 (score: 0.062)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000137179 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000127724 (score: 0.303)
  • NEWSINFRUP00000176887 (score: 0.301)
  • NEWSINFRUP00000160250 (score: 0.258)
  • NEWSINFRUP00000160851 (score: 0.189)
  • NEWSINFRUP00000140554 (score: 0.174)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016023001 (score: 1.000; bootstrap: 99%)
  • GSTENP00008351001 (score: 0.669)
  • GSTENP00000778001 (score: 0.431)
  • GSTENP00016903001 (score: 0.273)
  • GSTENP00026550001 (score: 0.161)
  • GSTENP00018857001 (score: 0.137)
  • GSTENP00002637001 (score: 0.068)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044233 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000034726 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000041823 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000032580 (score: 0.527)
  • ENSXETP00000036983 (score: 0.217)
  • ENSXETP00000028010 (score: 0.160)

From Inparanoid:20070104

Shigella flexneri

BGLB

From SHIGELLACYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00232 Glycosyl hydrolase family 1

Superfamily (EcoliWiki Page)

SUPERFAMILY:51445

EcoCyc

EcoCyc:EG10114

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10114

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000110

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0112

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0012169

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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