ilvB:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02776 PFAM:PF02776]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52467 SUPERFAMILY:52467]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52518 SUPERFAMILY:52518]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52518 SUPERFAMILY:52518]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00205 PF00205  Thiamine pyrophosphate enzyme, central domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02775 PF02775  Thiamine pyrophosphate enzyme, C-terminal TPP binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02776 PF02776  Thiamine pyrophosphate enzyme, N-terminal TPP binding domain]
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[[EcoCyc]]
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EcoCyc:EG10494
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10494
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000487
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0489
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011999
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT3G48560 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000000740 (score: 1.000; bootstrap: 100%)
  • YP_025294 (score: 0.242)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000018143 (score: 1.000; bootstrap: 100%)
  • YP_025294 (score: 0.253)

From Inparanoid:20070104

Oryza gramene

  • Q41768 (score: 1.000; bootstrap: 100%)
  • Q7XKQ8 (score: 1.000; bootstrap: 100%)
  • Q41769 (score: 0.924)
  • Q5D6B2 (score: 0.848)
  • Q5D6B3 (score: 0.847)
  • Q9FRV3 (score: 0.846)
  • Q6K2E8 (score: 0.846)
  • Q5D6B1 (score: 0.839)
  • Q9FRV2 (score: 0.837)
  • Q9FUD0 (score: 0.836)
  • Q84U07 (score: 0.803)
  • Q84U05 (score: 0.800)
  • Q84U08 (score: 0.799)
  • Q84U06 (score: 0.797)
  • Q8S3D0 (score: 0.771)
  • Q8S3J0 (score: 0.767)
  • O65305 (score: 0.688)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000147057 (score: 1.000; bootstrap: 100%)
  • YP_025294 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00019546001 (score: 1.000; bootstrap: 100%)
  • YP_025294 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

ILVB

From SHIGELLACYC

E. coli O157

ILVB

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:52467

Superfamily (EcoliWiki Page)

SUPERFAMILY:52518

Superfamily (EcoliWiki Page)

SUPERFAMILY:52518

Pfam (EcoliWiki Page)

PF00205 Thiamine pyrophosphate enzyme, central domain

Pfam (EcoliWiki Page)

PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

Pfam (EcoliWiki Page)

PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

EcoCyc

EcoCyc:EG10494

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10494

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000487

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0489

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011999

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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