uhpT:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07690 PFAM:PF07690]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
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[[EcoCyc]]
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EcoCyc:EG11054
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11054
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001043
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1047
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011981
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027137 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000007808 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G25220 (score: 1.000; bootstrap: 94%)
  • AT1G30560 (score: 0.835)
  • AT3G47420 (score: 0.585)
  • AT2G13100 (score: 0.477)
  • AT4G17550 (score: 0.475)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037192 (score: 1.000; bootstrap: 67%)
  • WBGene00037193 (score: 0.577)
  • WBGene00037194 (score: 0.294)
  • WBGene00041164 (score: 0.262)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00011717 (score: 1.000; bootstrap: 69%)
  • WBGene00011688 (score: 1.000; bootstrap: 66%)
  • WBGene00011718 (score: 0.578)
  • WBGene00011719 (score: 0.535)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005907 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000016164 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000015379 (score: 0.542)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0034611 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6H8H1 (score: 1.000; bootstrap: 86%)
  • Q949F1 (score: 0.979)
  • Q6ZD99 (score: 0.462)
  • Q7X8K1 (score: 0.462)
  • Q7FS87 (score: 0.459)
  • Q8H607 (score: 0.430)

From Inparanoid:20070104

Shigella flexneri

UHPT

From SHIGELLACYC

E. coli O157

UHPT

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:EG11054

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11054

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001043

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1047

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011981

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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