bcsA:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00535 PFAM:PF00535]
[http://pfam.janelia.org/family/PF00535 PF00535 Glycosyl transferase family 2]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53448 SUPERFAMILY:53448]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10587:SF33 PTHR10587:SF33]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=141371 SUPERFAMILY:141371]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF07238 PF07238  PilZ domain]
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[[EcoCyc]]
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EcoCyc:EG12260
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12260
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002141
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2169
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0011547
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT5G22740 (score: 1.000; bootstrap: 64%)
  • AT5G03760 (score: 0.716)
  • AT1G23480 (score: 0.622)
  • AT4G13410 (score: 0.597)
  • AT2G35650 (score: 0.592)
  • AT1G24070 (score: 0.560)
  • AT5G16190 (score: 0.533)
  • AT3G56000 (score: 0.532)
  • AT4G16590 (score: 0.440)
  • AT3G28180 (score: 0.336)
  • AT4G31590 (score: 0.334)
  • AT2G24630 (score: 0.324)
  • AT4G07960 (score: 0.321)
  • AT3G07330 (score: 0.317)

From Inparanoid:20070104

Oryza gramene

  • Q7EZW6 (score: 1.000; bootstrap: 100%)
  • Q7PC66 (score: 0.992)
  • Q9LHZ7 (score: 0.642)
  • Q8W3F9 (score: 0.589)
  • Q5Z6E5 (score: 0.541)
  • Q84UP7 (score: 0.307)
  • Q6S353 (score: 0.296)
  • Q4U0Z5 (score: 0.292)
  • Q9LLI1 (score: 0.291)
  • Q84M43 (score: 0.290)
  • Q67BC7 (score: 0.290)
  • Q4U0Z6 (score: 0.289)
  • Q75RZ1 (score: 0.287)
  • Q9LLI5 (score: 0.286)
  • Q6S354 (score: 0.286)
  • Q6S352 (score: 0.285)
  • Q851L8 (score: 0.284)
  • Q6UDF1 (score: 0.281)
  • Q9AV71 (score: 0.280)
  • Q6S349 (score: 0.275)
  • Q6AT26 (score: 0.275)
  • Q69P51 (score: 0.275)
  • Q4U101 (score: 0.274)
  • Q4U100 (score: 0.274)
  • Q9LLI9 (score: 0.274)
  • Q4U0Z9 (score: 0.274)
  • Q4U0Z2 (score: 0.274)
  • Q9LLI6 (score: 0.272)
  • Q84ZN6 (score: 0.272)
  • Q9LLI8 (score: 0.272)
  • Q6YVM4 (score: 0.271)
  • Q944E1 (score: 0.270)
  • Q84S11 (score: 0.270)
  • Q69V23 (score: 0.269)
  • Q9LLI3 (score: 0.267)
  • Q944E2 (score: 0.266)
  • Q6ZF89 (score: 0.266)
  • Q9LLI4 (score: 0.266)
  • Q9LLI2 (score: 0.266)
  • Q944D9 (score: 0.265)
  • Q6ZF86 (score: 0.265)
  • Q4U0Z4 (score: 0.263)
  • Q84S18 (score: 0.262)
  • Q4U0Z8 (score: 0.261)
  • Q5JN63 (score: 0.257)
  • Q67BC8 (score: 0.255)
  • Q9LLI7 (score: 0.251)
  • Q4U0Z7 (score: 0.247)
  • Q6S351 (score: 0.247)
  • Q7XHV0 (score: 0.244)
  • Q4U0Z3 (score: 0.242)
  • Q944E0 (score: 0.238)
  • Q6ZF85 (score: 0.238)
  • Q94GM9 (score: 0.212)
  • Q7XFJ8 (score: 0.212)
  • Q69XK5 (score: 0.155)
  • Q8W1N5 (score: 0.138)
  • Q6S350 (score: 0.126)
  • Q8W1N4 (score: 0.121)
  • O48961 (score: 0.111)
  • Q651X8 (score: 0.098)
  • Q651X6 (score: 0.096)
  • Q944E4 (score: 0.092)
  • Q7PC71 (score: 0.090)
  • Q7XUT9 (score: 0.090)
  • Q7PC72 (score: 0.088)
  • Q8W1N3 (score: 0.087)
  • Q8LMB4 (score: 0.085)
  • Q8W1M8 (score: 0.085)
  • Q944E3 (score: 0.084)
  • Q8W1N0 (score: 0.082)
  • Q7EYE9 (score: 0.080)
  • Q6S348 (score: 0.075)
  • Q651X7 (score: 0.074)
  • Q7XUU0 (score: 0.054)

From Inparanoid:20070104

E. coli O157

YHJOP

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00535 Glycosyl transferase family 2

Superfamily (EcoliWiki Page)

SUPERFAMILY:53448

Panther (EcoliWiki Page)

PTHR10587:SF33

Superfamily (EcoliWiki Page)

SUPERFAMILY:141371

Pfam (EcoliWiki Page)

PF07238 PilZ domain

EcoCyc

EcoCyc:EG12260

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12260

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002141

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2169

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0011547

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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