kefB:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
deleting Pfam from accessions table on evolution pages
touch
 
(3 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="A46abfe07bd487"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46abfe07bd487"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 189: Line 189:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="E46abfe21aa8e6"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46abfe21aa8e6"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00999 PF00999  Sodium/hydrogen exchanger family]
|
|-  
|-  
|
|
Line 199: Line 206:
|
|
   
   
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF02254 PF02254  TrkA-N domain]
|
|-
|
[[EcoCyc]]
|
EcoCyc:EG20110
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG20110
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120002444
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB4144
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0010949
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 218: Line 267:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="E46a83dc35cf20"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="E46a83dc35cf20"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT1G01790 (score: 1.000; bootstrap: 99%)
  • AT4G00630 (score: 0.833)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000020850 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009617 (score: 1.000; bootstrap: 100%)
  • WBGene00010214 (score: 0.678)
  • WBGene00009618 (score: 0.274)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000009546 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000005318 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0219541 (score: 1.000; bootstrap: 100%)
  • DDB0184575 (score: 0.148)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027112 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000279934 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000004640 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000016169 (score: 0.217)

From Inparanoid:20070104

Mus musculus

  • MGI:2444946 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000010303 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026281 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YJL094C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC1051c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00017938001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000038550 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Shigella flexneri

KEFB

From SHIGELLACYC

E. coli O157

KEFB

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00999 Sodium/hydrogen exchanger family

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Pfam (EcoliWiki Page)

PF02254 TrkA-N domain

EcoCyc

EcoCyc:EG20110

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG20110

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002444

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB4144

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010949

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=kefB:Evolution&oldid=1391423"