rpsJ:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00338 PFAM:PF00338]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11700:SF2 PTHR11700:SF2]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54999 SUPERFAMILY:54999]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11700:SF2 PTHR11700:SF2]
[http://pfam.janelia.org/family/PF00338 PF00338  Ribosomal protein S10p/S20e]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54999 SUPERFAMILY:54999]
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00338 PFAM:PF00338]
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[[EcoCyc]]
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EcoCyc:EG10909
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10909
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000900
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0902
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010862
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:36, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016934 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000030339 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G13120 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000025484 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000006762 (score: 0.951)
  • ENSBTAP00000003555 (score: 0.681)
  • ENSBTAP00000026480 (score: 0.522)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000010471 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000007160 (score: 0.903)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000001547 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2284 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-3231 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0218191 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0019936 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13894-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023266 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000029265 (score: 0.348)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000009589 (score: 1.000; bootstrap: 100%)
  • ENSP00000348430 (score: 0.896)
  • ENSP00000352423 (score: 0.566)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000028078 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000013097 (score: 0.989)
  • ENSMMUP00000024255 (score: 0.978)
  • ENSMMUP00000024256 (score: 0.978)
  • ENSMMUP00000018001 (score: 0.538)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011366 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1914677 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000034700 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000042442 (score: 0.967)
  • ENSPTRP00000038906 (score: 0.571)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000049070 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000011314 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000047148 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000040180 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000043412 (score: 0.956)
  • ENSRNOP00000050051 (score: 0.945)
  • ENSRNOP00000042661 (score: 0.846)
  • ENSRNOP00000045964 (score: 0.824)
  • ENSRNOP00000051318 (score: 0.522)
  • ENSRNOP00000048919 (score: 0.511)
  • ENSRNOP00000041983 (score: 0.505)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR041W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC5769 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000138409 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000012475 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

RPSJ

From SHIGELLACYC

E. coli O157

RPSJ

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11700:SF2

Superfamily (EcoliWiki Page)

SUPERFAMILY:54999

Pfam (EcoliWiki Page)

PF00338 Ribosomal protein S10p/S20e

PFAM (EcoliWiki Page)

PFAM:PF00338

EcoCyc

EcoCyc:EG10909

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10909

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000900

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0902

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010862

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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