tdcF:Evolution: Difference between revisions

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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01042 PFAM:PF01042]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11803:SF0 PTHR11803:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55298 SUPERFAMILY:55298]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01042 PF01042  Endoribonuclease L-PSP]
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[[EcoCyc]]
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EcoCyc:G7626
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12757
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004177
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2611
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010240
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021077 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000025706 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT3G20390 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000034602 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000029849 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000016718 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000033235 (score: 0.865)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00042416 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00016011 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000000682 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000012722 (score: 0.119)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040808-30 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040808-33 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-051030-9 (score: 0.810)
  • ZDB-CDNA-040718-346 (score: 0.804)
  • ZDB-GENE-040718-315 (score: 0.804)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0169400 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0028510 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13610-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000254878 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000007672 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000015513 (score: 0.290)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000008154 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1095401 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000007430 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER057C (score: 1.000; bootstrap: 100%)
  • YIL051C (score: 0.586)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC10390 (score: 1.000; bootstrap: 100%)
  • SPBC2G24c (score: 0.461)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000171495 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00024883001 (score: 1.000; bootstrap: 100%)
  • GSTENP00017364001 (score: 0.398)

From Inparanoid:20070104

Shigella flexneri

YHAR

From SHIGELLACYC

E. coli O157

YHAR

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11803:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55298

Pfam (EcoliWiki Page)

PF01042 Endoribonuclease L-PSP

EcoCyc

EcoCyc:G7626

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12757

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004177

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2611

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010240

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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