exuT:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11662:SF32 PTHR11662:SF32]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF07690 PFAM:PF07690]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11662:SF32 PTHR11662:SF32]
[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
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[[EcoCyc]]
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EcoCyc:EG12738
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12738
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002376
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2594
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0010171
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000024771 (score: 1.000; bootstrap: 77%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00017398 (score: 1.000; bootstrap: 70%)
  • WBGene00022788 (score: 0.192)
  • WBGene00012130 (score: 0.123)
  • WBGene00015333 (score: 0.111)
  • WBGene00017798 (score: 0.076)
  • WBGene00017681 (score: 0.075)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030452 (score: 1.000; bootstrap: 94%)
  • FBgn0034392 (score: 1.000; bootstrap: 94%)
  • FBgn0038799 (score: 1.000; bootstrap: 89%)
  • FBgn0034394 (score: 0.422)
  • FBgn0010651 (score: 0.370)
  • FBgn0033234 (score: 0.290)
  • FBgn0034784 (score: 0.287)
  • FBgn0034783 (score: 0.278)
  • FBgn0050272 (score: 0.270)
  • FBgn0050265 (score: 0.267)
  • FBgn0034782 (score: 0.262)
  • FBgn0033048 (score: 0.244)
  • FBgn0024315 (score: 0.241)
  • FBgn0039886 (score: 0.238)
  • FBgn0031424 (score: 0.225)
  • FBgn0034785 (score: 0.224)
  • FBgn0010497 (score: 0.204)
  • FBgn0029727 (score: 0.198)
  • FBgn0031645 (score: 0.195)
  • FBgn0031307 (score: 0.165)
  • FBgn0028513 (score: 0.164)
  • FBgn0034490 (score: 0.144)
  • FBgn0016684 (score: 0.140)
  • FBgn0058263 (score: 0.073)
  • FBgn0025684 (score: 0.053)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA18114-PA (score: 1.000; bootstrap: 93%)
  • GA18084-PA (score: 1.000; bootstrap: 87%)
  • GA13487-PA (score: 1.000; bootstrap: 87%)
  • GA13486-PA (score: 0.396)
  • GA21326-PA (score: 0.356)
  • GA15741-PA (score: 0.320)
  • GA22061-PA (score: 0.319)
  • GA15735-PA (score: 0.288)
  • GA20823-PA (score: 0.274)
  • GA15178-PA (score: 0.250)
  • GA15786-PA (score: 0.238)
  • GA17586-PA (score: 0.236)
  • GA18795-PA (score: 0.227)
  • GA20000-PA (score: 0.223)
  • GA18388-PA (score: 0.203)
  • GA22101-PA (score: 0.187)
  • GA22082-PA (score: 0.169)
  • GA10155-PA (score: 0.163)
  • GA13728-PA (score: 0.057)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013621 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YLR004C (score: 1.000; bootstrap: 100%)
  • YJR152W (score: 0.190)
  • YLL055W (score: 0.140)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000044341 (score: 1.000; bootstrap: 80%)

From Inparanoid:20070104

Shigella flexneri

EXUT

From SHIGELLACYC

E. coli O157

EXUT

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR11662:SF32

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:EG12738

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12738

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002376

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2594

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0010171

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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