yghU:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00043 PFAM:PF00043]
[http://pfam.janelia.org/family/PF00043 PF00043 Glutathione S-transferase, C-terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02798 PF02798  Glutathione S-transferase, N-terminal domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=47616 SUPERFAMILY:47616]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52833 SUPERFAMILY:52833]
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[[EcoCyc]]
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EcoCyc:G7553
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13005
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120004113
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2827
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009812
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000321 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000011261 (score: 0.266)
  • ENSANGP00000013141 (score: 0.243)
  • ENSANGP00000011752 (score: 0.230)
  • ENSANGP00000023588 (score: 0.217)
  • ENSANGP00000028492 (score: 0.214)
  • ENSANGP00000013058 (score: 0.209)
  • ENSANGP00000013059 (score: 0.167)
  • ENSANGP00000011770 (score: 0.151)
  • ENSANGP00000015332 (score: 0.149)
  • ENSANGP00000012678 (score: 0.149)
  • ENSANGP00000000087 (score: 0.138)
  • ENSANGP00000028067 (score: 0.131)
  • ENSANGP00000018720 (score: 0.081)
  • ENSANGP00000024065 (score: 0.057)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020682 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000020699 (score: 0.432)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-1491 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2425 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-2551 (score: 0.334)
  • ZDB-GENE-040426-1617 (score: 0.334)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215230 (score: 1.000; bootstrap: 78%)
  • DDB0167587 (score: 0.866)
  • DDB0203252 (score: 0.404)
  • DDB0168578 (score: 0.091)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0010039 (score: 1.000; bootstrap: 100%)
  • FBgn0010041 (score: 0.627)
  • FBgn0010038 (score: 0.621)
  • FBgn0010040 (score: 0.600)
  • FBgn0001149 (score: 0.555)
  • FBgn0042206 (score: 0.552)
  • FBgn0010043 (score: 0.525)
  • FBgn0010042 (score: 0.504)
  • FBgn0010044 (score: 0.504)
  • FBgn0038020 (score: 0.427)
  • FBgn0038029 (score: 0.260)
  • FBgn0053546 (score: 0.110)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA14986-PA (score: 1.000; bootstrap: 100%)
  • GA10031-PA (score: 0.658)
  • GA18009-PA (score: 0.554)
  • GA10065-PA (score: 0.549)
  • GA18171-PA (score: 0.500)
  • GA14590-PA (score: 0.299)
  • GA18357-PA (score: 0.054)

From Inparanoid:20070104

Oryza gramene

  • Q8H8D6 (score: 1.000; bootstrap: 76%)
  • Q6QN20 (score: 1.000; bootstrap: 73%)
  • Q9FWE3 (score: 0.586)
  • Q7XCK0 (score: 0.586)
  • Q9FQC5 (score: 0.546)
  • Q8H8D8 (score: 0.235)
  • Q9FQC7 (score: 0.231)
  • Q9FQD0 (score: 0.227)
  • Q9FQC6 (score: 0.225)
  • Q8H8E0 (score: 0.195)
  • Q9FUD8 (score: 0.193)
  • Q8H8D9 (score: 0.176)
  • Q6ZJH9 (score: 0.132)
  • Q9FQC3 (score: 0.109)
  • Q7XXN1 (score: 0.103)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL229C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC9657c (score: 1.000; bootstrap: 90%)
  • SPCC1919c (score: 0.716)

From Inparanoid:20070104

Shigella flexneri

S3237

From SHIGELLACYC

E. coli O157

Z4343

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00043 Glutathione S-transferase, C-terminal domain

Pfam (EcoliWiki Page)

PF02798 Glutathione S-transferase, N-terminal domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:47616

Superfamily (EcoliWiki Page)

SUPERFAMILY:52833

EcoCyc

EcoCyc:G7553

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13005

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120004113

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2827

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009812

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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