serA:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00389 PFAM:PF00389]
[http://pfam.janelia.org/family/PF00389 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02826 PF02826  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01842 PF01842  ACT domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52283 SUPERFAMILY:52283]
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR10996:SF18 PTHR10996:SF18]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55021 SUPERFAMILY:55021]
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[[EcoCyc]]
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EcoCyc:EG10944
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10944
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000933
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0937
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009561
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000016770 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000035614 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G17745 (score: 1.000; bootstrap: 94%)
  • AT4G34200 (score: 0.650)
  • AT3G19480 (score: 0.618)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000008907 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00039663 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007836 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000014811 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012621 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030131-647 (score: 1.000; bootstrap: 91%)
  • ZDB-CDNA-040425-1108 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230052 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0032350 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19489-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000004720 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000263167 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000030404 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000006699 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Mus musculus

  • MGI:1355330 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000026185 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000044952 (score: 0.737)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YER081W (score: 1.000; bootstrap: 100%)
  • YIL074C (score: 0.859)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPCC3647 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000149284 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00031408001 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000041338 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

SERA

From SHIGELLACYC

E. coli O157

SERA

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

Pfam (EcoliWiki Page)

PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

Pfam (EcoliWiki Page)

PF01842 ACT domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Superfamily (EcoliWiki Page)

SUPERFAMILY:52283

Panther (EcoliWiki Page)

PTHR10996:SF18

Superfamily (EcoliWiki Page)

SUPERFAMILY:55021

EcoCyc

EcoCyc:EG10944

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10944

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000933

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0937

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009561

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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