ygfU:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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From ECOO157CYC  
From ECOO157CYC  


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!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00860 PFAM:PF00860]
[http://pfam.janelia.org/family/PF00860 PF00860 Permease family]
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[[EcoCyc]]
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EcoCyc:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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!|Name!!URL!!Comments
!|Name!!URL!!Comments


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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
 
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}

Latest revision as of 08:35, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000027988 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000026915 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT2G26510 (score: 1.000; bootstrap: 100%)
  • AT2G34190 (score: 0.491)
  • AT2G05760 (score: 0.473)
  • AT5G62890 (score: 0.409)
  • AT5G49990 (score: 0.403)
  • AT1G49960 (score: 0.395)
  • AT1G60030 (score: 0.393)
  • AT1G10540 (score: 0.384)
  • AT1G65550 (score: 0.357)
  • AT2G27810 (score: 0.208)
  • AT4G38050 (score: 0.190)
  • AT5G25420 (score: 0.183)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000012390 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000010823 (score: 0.518)
  • ENSBTAP00000016751 (score: 0.140)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00031101 (score: 1.000; bootstrap: 100%)
  • WBGene00039175 (score: 0.307)
  • WBGene00030168 (score: 0.291)
  • WBGene00030171 (score: 0.288)
  • WBGene00024937 (score: 0.277)
  • WBGene00030153 (score: 0.253)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00011595 (score: 1.000; bootstrap: 100%)
  • WBGene00011593 (score: 0.812)
  • WBGene00011596 (score: 0.492)
  • WBGene00020004 (score: 0.431)
  • WBGene00021994 (score: 0.308)
  • WBGene00008252 (score: 0.247)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000004782 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000009057 (score: 0.466)
  • ENSCAFP00000008511 (score: 0.460)
  • ENSCAFP00000022144 (score: 0.118)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000012358 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000012369 (score: 0.538)
  • ENSCINP00000007513 (score: 0.395)
  • ENSCINP00000007695 (score: 0.382)
  • ENSCINP00000016143 (score: 0.355)
  • ENSCINP00000006850 (score: 0.346)
  • ENSCINP00000011752 (score: 0.185)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050306-38 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-050306-38 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0037807 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA19493-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000019122 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000000260 (score: 0.413)
  • ENSGALP00000018700 (score: 0.099)
  • ENSGALP00000018487 (score: 0.089)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000344322 (score: 1.000; bootstrap: 100%)
  • ENSP00000302851 (score: 0.550)
  • ENSP00000295738 (score: 0.063)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000026307 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000001345 (score: 0.233)
  • ENSMMUP00000003100 (score: 0.089)
  • ENSMMUP00000001065 (score: 0.056)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000017601 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000014568 (score: 0.451)
  • ENSMODP00000014898 (score: 0.448)
  • ENSMODP00000019148 (score: 0.091)

From Inparanoid:20070104

Mus musculus

  • MGI:1859682 (score: 1.000; bootstrap: 100%)
  • MGI:1341903 (score: 0.562)
  • MGI:1917272 (score: 0.158)
  • MGI:104516 (score: 0.137)

From Inparanoid:20070104

Oryza gramene

  • Q6Z257 (score: 1.000; bootstrap: 100%)
  • Q6ZIE6 (score: 1.000; bootstrap: 100%)
  • Q6H5A2 (score: 0.874)
  • Q6Z7R7 (score: 0.827)
  • Q94DT2 (score: 0.808)
  • Q852B5 (score: 0.798)
  • Q41760 (score: 0.547)
  • Q851K4 (score: 0.529)
  • Q7XHQ9 (score: 0.081)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000022669 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000046760 (score: 0.267)
  • ENSPTRP00000022108 (score: 0.063)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028885 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000027048 (score: 0.564)
  • ENSRNOP00000030381 (score: 0.157)
  • ENSRNOP00000024667 (score: 0.133)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000151991 (score: 1.000; bootstrap: 100%)
  • NEWSINFRUP00000151988 (score: 0.776)
  • NEWSINFRUP00000155278 (score: 0.637)
  • NEWSINFRUP00000128252 (score: 0.468)
  • NEWSINFRUP00000128512 (score: 0.410)
  • NEWSINFRUP00000150933 (score: 0.397)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016721001 (score: 1.000; bootstrap: 100%)
  • GSTENP00020272001 (score: 0.499)
  • GSTENP00025636001 (score: 0.436)
  • GSTENP00014656001 (score: 0.424)
  • GSTENP00030966001 (score: 0.263)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000047341 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000043654 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000036732 (score: 0.497)
  • ENSXETP00000018416 (score: 0.486)
  • ENSXETP00000030372 (score: 0.094)

From Inparanoid:20070104

Shigella flexneri

YGFU

From SHIGELLACYC

E. coli O157

YGFU

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00860 Permease family

EcoCyc

EcoCyc:

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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