truD:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Canis familiaris''   
''Canis familiaris''   
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''Gallus gallus''   
''Gallus gallus''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR13326:SF0 PTHR13326:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55120 SUPERFAMILY:55120]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01142 PFAM:PF01142]
[http://pfam.janelia.org/family/PF01142 PF01142 tRNA pseudouridine synthase D (TruD)]
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[[EcoCyc]]
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EcoCyc:G7422
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13109
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003987
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2912
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0009011
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:35, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Canis familiaris

  • ENSCAFP00000005989 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000014286 (score: 0.139)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000013183 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000015590 (score: 0.095)

From Inparanoid:20070104

Mus musculus

  • MGI:1925947 (score: 1.000; bootstrap: 100%)
  • MGI:1926145 (score: 0.143)

From Inparanoid:20070104

Oryza gramene

  • Q5ZBZ5 (score: 1.000; bootstrap: 100%)
  • Q6L4W6 (score: 0.284)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000014063 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000033040 (score: 0.079)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000050173 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000014881 (score: 0.140)

From Inparanoid:20070104

Shigella flexneri

YGBO

From SHIGELLACYC

E. coli O157

YGBO

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR13326:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55120

Pfam (EcoliWiki Page)

PF01142 tRNA pseudouridine synthase D (TruD)

EcoCyc

EcoCyc:G7422

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13109

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003987

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2912

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0009011

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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