truA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01416 PF01416  tRNA pseudouridine synthase]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01416 PF01416  tRNA pseudouridine synthase]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01416 PFAM:PF01416]
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11142:SF0 PTHR11142:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55120 SUPERFAMILY:55120]
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[[EcoCyc]]
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EcoCyc:EG10454
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10454
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000447
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0449
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007657
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:34, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000014976 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000034996 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G09800 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010018 (score: 1.000; bootstrap: 59%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00024264 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006473 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000028470 (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010018 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000018388 (score: 0.189)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-041212-26 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-041212-30 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0218427 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0038811 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA20054-PA (score: 1.000; bootstrap: 57%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000002628 (score: 1.000; bootstrap: 71%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000303329 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000010016 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:1929237 (score: 1.000; bootstrap: 62%)

From Inparanoid:20070104

Oryza gramene

  • Q6ESS0 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000037 (score: 1.000; bootstrap: 65%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000034280 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YFL001W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC25B85 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000181297 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00006401001 (score: 1.000; bootstrap: 54%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000014797 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Shigella flexneri

TRUA

From SHIGELLACYC

E. coli O157

TRUA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01416 tRNA pseudouridine synthase

Pfam (EcoliWiki Page)

PF01416 tRNA pseudouridine synthase

Panther (EcoliWiki Page)

PTHR11142:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55120

EcoCyc

EcoCyc:EG10454

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10454

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000447

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0449

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007657

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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