alaA:Evolution: Difference between revisions

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{{Tab|Quickview|yfbQ}}{{Tab|Gene|yfbQ}}{{Tab|Gene Product(s)|yfbQ}}{{Tab|Expression|yfbQ}}{{Tab On|Evolution|yfbQ}}{{Tab|On One Page|yfbQ}}{{TabsBottom}}
{{Tab|Quickview|alaA}}{{Tab|Gene|alaA}}{{Tab|Gene Product(s)|alaA}}{{Tab|Expression|alaA}}{{Tab On|Evolution|alaA}}{{Tab|On One Page|alaA}}{{TabsBottom}}
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{|class = 'sortable' {{Prettytable}} id='210827'
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="S46abd84c5ddde"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00155 PF00155  Aminotransferase class I and II]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00155 PFAM:PF00155]
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11751:SF30 PTHR11751:SF30]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53383 SUPERFAMILY:53383]
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[[EcoCyc]]
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EcoCyc:G7184
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14101
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003759
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3854
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0007560
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000017843 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013893 (score: 1.000; bootstrap: 83%)
  • ENSAPMP00000021808 (score: 0.198)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010309 (score: 1.000; bootstrap: 51%)
  • ENSBTAP00000003881 (score: 0.486)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029584 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009628 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005470 (score: 1.000; bootstrap: 90%)
  • ENSCAFP00000002409 (score: 0.215)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000000577 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050302-11 (score: 1.000; bootstrap: 89%)
  • ZDB-EST-050302-130 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230996 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030558 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13109-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006600 (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000348234 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002702 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013734 (score: 1.000; bootstrap: 51%)
  • ENSMODP00000016065 (score: 0.653)

From Inparanoid:20070104

Mus musculus

  • MGI:98487 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Oryza gramene

  • P52894 (score: 1.000; bootstrap: 61%)
  • P34106 (score: 0.895)
  • O82443 (score: 0.895)
  • Q9S768 (score: 0.883)
  • Q94HC5 (score: 0.877)
  • Q7XF06 (score: 0.877)
  • Q7X7S9 (score: 0.780)
  • Q5GAU1 (score: 0.759)
  • Q5GAQ3 (score: 0.757)
  • Q94HF9 (score: 0.679)
  • Q69PH8 (score: 0.554)
  • Q94HC6 (score: 0.478)
  • Q7XF05 (score: 0.478)
  • Q69UU3 (score: 0.425)
  • Q84UX4 (score: 0.421)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000013801 (score: 1.000; bootstrap: 55%)
  • ENSPTRP00000035425 (score: 0.077)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022721 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR111C (score: 1.000; bootstrap: 100%)
  • YLR089C (score: 0.602)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC5828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145598 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016804001 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000050583 (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

Shigella flexneri

S2501

From SHIGELLACYC

E. coli O157

Z3551

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00155 Aminotransferase class I and II

Panther (EcoliWiki Page)

PTHR11751:SF30

Superfamily (EcoliWiki Page)

SUPERFAMILY:53383

EcoCyc

EcoCyc:G7184

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003759

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3854

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007560

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

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