alaA:Evolution: Difference between revisions

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!|Organism!!Homologs (Statistics)!!Comments
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!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00155 PF00155  Aminotransferase class I and II]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
[[EcoCyc]]
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EcoCyc:G7184
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG14101
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003759
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3854
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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[http://pfam.janelia.org/family/PF00155 PF00155  Aminotransferase class I and II] 
ASAP:ABE-0007560
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


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Latest revision as of 08:34, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000017843 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000013893 (score: 1.000; bootstrap: 83%)
  • ENSAPMP00000021808 (score: 0.198)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000010309 (score: 1.000; bootstrap: 51%)
  • ENSBTAP00000003881 (score: 0.486)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029584 (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009628 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005470 (score: 1.000; bootstrap: 90%)
  • ENSCAFP00000002409 (score: 0.215)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000000577 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050302-11 (score: 1.000; bootstrap: 89%)
  • ZDB-EST-050302-130 (score: 1.000; bootstrap: 89%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0230996 (score: 1.000; bootstrap: 81%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0030558 (score: 1.000; bootstrap: 74%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA13109-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000006600 (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000348234 (score: 1.000; bootstrap: 52%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000002702 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000013734 (score: 1.000; bootstrap: 51%)
  • ENSMODP00000016065 (score: 0.653)

From Inparanoid:20070104

Mus musculus

  • MGI:98487 (score: 1.000; bootstrap: 55%)

From Inparanoid:20070104

Oryza gramene

  • P52894 (score: 1.000; bootstrap: 61%)
  • P34106 (score: 0.895)
  • O82443 (score: 0.895)
  • Q9S768 (score: 0.883)
  • Q94HC5 (score: 0.877)
  • Q7XF06 (score: 0.877)
  • Q7X7S9 (score: 0.780)
  • Q5GAU1 (score: 0.759)
  • Q5GAQ3 (score: 0.757)
  • Q94HF9 (score: 0.679)
  • Q69PH8 (score: 0.554)
  • Q94HC6 (score: 0.478)
  • Q7XF05 (score: 0.478)
  • Q69UU3 (score: 0.425)
  • Q84UX4 (score: 0.421)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000013801 (score: 1.000; bootstrap: 55%)
  • ENSPTRP00000035425 (score: 0.077)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022721 (score: 1.000; bootstrap: 56%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YDR111C (score: 1.000; bootstrap: 100%)
  • YLR089C (score: 0.602)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC5828 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000145598 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00016804001 (score: 1.000; bootstrap: 66%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000050583 (score: 1.000; bootstrap: 50%)

From Inparanoid:20070104

Shigella flexneri

S2501

From SHIGELLACYC

E. coli O157

Z3551

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00155 Aminotransferase class I and II

Panther (EcoliWiki Page)

PTHR11751:SF30

Superfamily (EcoliWiki Page)

SUPERFAMILY:53383

EcoCyc

EcoCyc:G7184

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14101

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003759

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3854

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0007560

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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