rfbB:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Danio rerio''   
''Danio rerio''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF01370 PF01370  NAD dependent epimerase/dehydratase family]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01370 PFAM:PF01370]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[[EcoCyc]]
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EcoCyc:EG12412
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG12412
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120002273
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB2311
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006766
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
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===Categories===
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Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Apis mellifera

  • ENSAPMP00000021860 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • YP_026255 (score: 1.000; bootstrap: 100%)
  • AT1G78570 (score: 1.000; bootstrap: 99%)
  • AT1G53500 (score: 1.000; bootstrap: 99%)
  • AT3G14790 (score: 0.895)
  • AT1G63000 (score: 0.233)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000006984 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Caenorhabditis briggsae

  • YP_026255 (score: 0.617)
  • WBGene00034706 (score: 1.000; bootstrap: 100%)
  • WBGene00026470 (score: 0.140)

From Inparanoid:20070104

Caenorhabditis elegans

  • YP_026255 (score: 0.618)
  • WBGene00018737 (score: 1.000; bootstrap: 100%)
  • WBGene00015298 (score: 0.125)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000007947 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.611)

From Inparanoid:20070104

Danio rerio

  • YP_026255 (score: 1.000; bootstrap: 99%)
  • ZDB-GENE-030131-5718 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1388 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040425-1387 (score: 0.653)

From Inparanoid:20070104

Dictyostelium discoideum

  • YP_026255 (score: 1.000; bootstrap: 99%)
  • DDB0231748 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000027264 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.608)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000261296 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000017161 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.647)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011711 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Mus musculus

  • MGI:1923605 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.604)

From Inparanoid:20070104

Oryza gramene

  • YP_026255 (score: 1.000; bootstrap: 100%)
  • Q6B6M1 (score: 1.000; bootstrap: 59%)
  • Q6B6L8 (score: 1.000; bootstrap: 52%)
  • Q8W3J1 (score: 0.907)
  • Q5QMG6 (score: 0.903)
  • Q6F3E9 (score: 0.819)
  • Q75PK7 (score: 0.787)
  • Q6B6L9 (score: 0.784)
  • Q6I683 (score: 0.778)
  • Q60E78 (score: 0.756)
  • Q75PK6 (score: 0.720)
  • Q8W3J0 (score: 0.540)
  • Q9FSE2 (score: 0.538)
  • Q6B6M0 (score: 0.532)
  • Q7XY21 (score: 0.531)
  • Q8W2F7 (score: 0.522)
  • Q5QMG5 (score: 0.317)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000010139 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.610)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000012925 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.605)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • YP_026255 (score: 0.645)
  • SPBPB2B21 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000157727 (score: 1.000; bootstrap: 98%)
  • YP_026255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00025956001 (score: 1.000; bootstrap: 100%)
  • GSTENP00000105001 (score: 0.057)
  • YP_026255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000009242 (score: 1.000; bootstrap: 100%)
  • YP_026255 (score: 0.340)

From Inparanoid:20070104

Shigella flexneri

RFBB

From SHIGELLACYC

edit table


Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01370 NAD dependent epimerase/dehydratase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

EcoCyc

EcoCyc:EG12412

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG12412

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120002273

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB2311

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006766

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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