yedQ:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416465&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416465&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00990 PF00990  GGDEF domain]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00990 PFAM:PF00990]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55073 SUPERFAMILY:55073]
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[[EcoCyc]]
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EcoCyc:G7049
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EcoGene]]
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EcoGene:EG14040
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[RegulonDB]]
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RegulonDB:ECK120003635
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB3794
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0006495
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
</noinclude>
===Categories===
===Categories===
{{BacktoTop}}
{{BacktoTop}}
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in E. coli O157]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Dictyostelium discoideum

  • DDB0185528 (score: 1.000; bootstrap: 100%)
  • DDB0229846 (score: 0.150)
  • DDB0167213 (score: 0.147)
  • DDB0217588 (score: 0.142)
  • DDB0169144 (score: 0.141)
  • DDB0189729 (score: 0.140)
  • DDB0187557 (score: 0.140)
  • DDB0189622 (score: 0.140)
  • DDB0219416 (score: 0.136)
  • DDB0215287 (score: 0.135)
  • DDB0218359 (score: 0.135)
  • DDB0203706 (score: 0.134)
  • DDB0203610 (score: 0.129)
  • DDB0190180 (score: 0.129)
  • DDB0189776 (score: 0.129)
  • DDB0232147 (score: 0.129)
  • DDB0214836 (score: 0.128)
  • DDB0230105 (score: 0.127)
  • DDB0218627 (score: 0.125)
  • DDB0186902 (score: 0.125)
  • DDB0191336 (score: 0.125)
  • DDB0186162 (score: 0.122)
  • DDB0229424 (score: 0.122)
  • DDB0216327 (score: 0.121)
  • DDB0190268 (score: 0.121)
  • DDB0187521 (score: 0.121)
  • DDB0203699 (score: 0.117)
  • DDB0205138 (score: 0.116)
  • DDB0220469 (score: 0.115)
  • DDB0219538 (score: 0.115)
  • DDB0218251 (score: 0.115)
  • DDB0216545 (score: 0.114)
  • DDB0218894 (score: 0.114)
  • DDB0220484 (score: 0.114)
  • DDB0217492 (score: 0.113)
  • DDB0191606 (score: 0.112)
  • DDB0217787 (score: 0.112)
  • DDB0189627 (score: 0.112)
  • DDB0229844 (score: 0.110)
  • DDB0203942 (score: 0.110)
  • DDB0219241 (score: 0.108)
  • DDB0218877 (score: 0.106)
  • DDB0169381 (score: 0.106)
  • DDB0204242 (score: 0.105)
  • DDB0218585 (score: 0.105)
  • DDB0220101 (score: 0.105)
  • DDB0185561 (score: 0.104)
  • DDB0202130 (score: 0.104)
  • DDB0203201 (score: 0.104)
  • DDB0230046 (score: 0.103)
  • DDB0218732 (score: 0.103)
  • DDB0229968 (score: 0.103)
  • DDB0229877 (score: 0.100)
  • DDB0190883 (score: 0.100)
  • DDB0219375 (score: 0.100)
  • DDB0187962 (score: 0.100)
  • DDB0167808 (score: 0.100)
  • DDB0189568 (score: 0.100)
  • DDB0216980 (score: 0.099)
  • DDB0220617 (score: 0.098)
  • DDB0169228 (score: 0.098)
  • DDB0231323 (score: 0.097)
  • DDB0220098 (score: 0.097)
  • DDB0203809 (score: 0.096)
  • DDB0231107 (score: 0.095)
  • DDB0219912 (score: 0.095)
  • DDB0189545 (score: 0.095)
  • DDB0192175 (score: 0.094)
  • DDB0190465 (score: 0.094)
  • DDB0190122 (score: 0.094)
  • DDB0186757 (score: 0.093)
  • DDB0220100 (score: 0.093)
  • DDB0167340 (score: 0.092)
  • DDB0191270 (score: 0.092)
  • DDB0220644 (score: 0.092)
  • DDB0190151 (score: 0.091)
  • DDB0217496 (score: 0.090)
  • DDB0189395 (score: 0.090)
  • DDB0217956 (score: 0.089)
  • DDB0204913 (score: 0.088)
  • DDB0189575 (score: 0.088)
  • DDB0231781 (score: 0.087)
  • DDB0218162 (score: 0.087)
  • DDB0205673 (score: 0.087)
  • DDB0168534 (score: 0.087)
  • DDB0185218 (score: 0.087)
  • DDB0185928 (score: 0.087)
  • DDB0220002 (score: 0.086)
  • DDB0217728 (score: 0.086)
  • DDB0217622 (score: 0.085)
  • DDB0191612 (score: 0.084)
  • DDB0205468 (score: 0.084)
  • DDB0205678 (score: 0.084)
  • DDB0204630 (score: 0.084)
  • DDB0189672 (score: 0.084)
  • DDB0219500 (score: 0.083)
  • DDB0191751 (score: 0.083)
  • DDB0191783 (score: 0.083)
  • DDB0220503 (score: 0.083)
  • DDB0204363 (score: 0.082)
  • DDB0231292 (score: 0.082)
  • DDB0191621 (score: 0.082)
  • DDB0219317 (score: 0.082)
  • DDB0218793 (score: 0.082)
  • DDB0229347 (score: 0.082)
  • DDB0188963 (score: 0.081)
  • DDB0216881 (score: 0.081)
  • DDB0190155 (score: 0.081)
  • DDB0231558 (score: 0.080)
  • DDB0215339 (score: 0.080)
  • DDB0189420 (score: 0.080)
  • DDB0218099 (score: 0.079)
  • DDB0217562 (score: 0.078)
  • DDB0218800 (score: 0.078)
  • DDB0188510 (score: 0.078)
  • DDB0217642 (score: 0.078)
  • DDB0206510 (score: 0.078)
  • DDB0220480 (score: 0.077)
  • DDB0169450 (score: 0.077)
  • DDB0218470 (score: 0.077)
  • DDB0188131 (score: 0.077)
  • DDB0203331 (score: 0.077)
  • DDB0217224 (score: 0.077)
  • DDB0219992 (score: 0.077)
  • DDB0187605 (score: 0.077)
  • DDB0216955 (score: 0.077)
  • DDB0185203 (score: 0.076)
  • DDB0216684 (score: 0.076)
  • DDB0188903 (score: 0.076)
  • DDB0220618 (score: 0.075)
  • DDB0202116 (score: 0.075)
  • DDB0169187 (score: 0.075)
  • DDB0190700 (score: 0.075)
  • DDB0203871 (score: 0.074)
  • DDB0218371 (score: 0.073)
  • DDB0201987 (score: 0.073)
  • DDB0204313 (score: 0.073)
  • DDB0219647 (score: 0.073)
  • DDB0190915 (score: 0.072)
  • DDB0201744 (score: 0.072)
  • DDB0191608 (score: 0.071)
  • DDB0186079 (score: 0.071)
  • DDB0205661 (score: 0.071)
  • DDB0217791 (score: 0.071)
  • DDB0216929 (score: 0.071)
  • DDB0217348 (score: 0.071)
  • DDB0168041 (score: 0.071)
  • DDB0187939 (score: 0.070)
  • DDB0203653 (score: 0.070)
  • DDB0206201 (score: 0.070)
  • DDB0218265 (score: 0.069)
  • DDB0188278 (score: 0.069)
  • DDB0205274 (score: 0.069)
  • DDB0168646 (score: 0.068)
  • DDB0190488 (score: 0.068)
  • DDB0183911 (score: 0.068)
  • DDB0218209 (score: 0.068)
  • DDB0186456 (score: 0.067)
  • DDB0205932 (score: 0.067)
  • DDB0183780 (score: 0.067)
  • DDB0189261 (score: 0.066)
  • DDB0188684 (score: 0.066)
  • DDB0219315 (score: 0.066)
  • DDB0188996 (score: 0.065)
  • DDB0185896 (score: 0.065)
  • DDB0204646 (score: 0.065)
  • DDB0188347 (score: 0.065)
  • DDB0204882 (score: 0.065)
  • DDB0216167 (score: 0.065)
  • DDB0188922 (score: 0.064)
  • DDB0204807 (score: 0.064)
  • DDB0191390 (score: 0.064)
  • DDB0187137 (score: 0.064)
  • DDB0202086 (score: 0.062)
  • DDB0219805 (score: 0.062)
  • DDB0232156 (score: 0.061)
  • DDB0219601 (score: 0.060)
  • DDB0217334 (score: 0.060)
  • DDB0168053 (score: 0.060)
  • DDB0218641 (score: 0.060)
  • DDB0206433 (score: 0.060)
  • DDB0206211 (score: 0.060)
  • DDB0229866 (score: 0.060)
  • DDB0184259 (score: 0.059)
  • DDB0188075 (score: 0.059)
  • DDB0220091 (score: 0.059)
  • DDB0204288 (score: 0.059)
  • DDB0202847 (score: 0.058)
  • DDB0219994 (score: 0.058)
  • DDB0231992 (score: 0.058)
  • DDB0232150 (score: 0.058)
  • DDB0232365 (score: 0.057)
  • DDB0206393 (score: 0.057)
  • DDB0206039 (score: 0.057)
  • DDB0217083 (score: 0.057)
  • DDB0187197 (score: 0.057)
  • DDB0189753 (score: 0.057)
  • DDB0188719 (score: 0.056)
  • DDB0205035 (score: 0.056)
  • DDB0217124 (score: 0.056)
  • DDB0217291 (score: 0.056)
  • DDB0205351 (score: 0.056)
  • DDB0217825 (score: 0.055)
  • DDB0218752 (score: 0.055)
  • DDB0185985 (score: 0.055)
  • DDB0186607 (score: 0.054)
  • DDB0215217 (score: 0.054)
  • DDB0206011 (score: 0.054)
  • DDB0231335 (score: 0.053)
  • DDB0168181 (score: 0.053)
  • DDB0217199 (score: 0.053)
  • DDB0190573 (score: 0.053)
  • DDB0204997 (score: 0.053)
  • DDB0188214 (score: 0.053)
  • DDB0217047 (score: 0.053)
  • DDB0185950 (score: 0.052)
  • DDB0218829 (score: 0.052)
  • DDB0188052 (score: 0.052)
  • DDB0218310 (score: 0.051)
  • DDB0216866 (score: 0.051)

From Inparanoid:20070104

E. coli O157

Z3047

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00990 GGDEF domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:55073

EcoCyc

EcoCyc:G7049

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14040

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003635

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3794

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006495

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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