otsA:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Oryza gramene''   
''Oryza gramene''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00982 PF00982  Glycosyltransferase family 20]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00982 PFAM:PF00982]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53756 SUPERFAMILY:53756]
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[[EcoCyc]]
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EcoCyc:EG11751
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11751
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001689
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1701
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006318
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000021902 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000007255 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G16980 (score: 1.000; bootstrap: 100%)
  • AT1G17000 (score: 0.634)
  • AT1G78580 (score: 0.599)
  • AT4G27550 (score: 0.572)
  • AT1G06410 (score: 0.133)
  • AT1G23870 (score: 0.131)
  • AT4G17770 (score: 0.123)
  • AT1G70290 (score: 0.119)
  • AT1G60140 (score: 0.117)
  • AT1G68020 (score: 0.117)
  • AT2G18700 (score: 0.105)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00032260 (score: 1.000; bootstrap: 100%)
  • WBGene00025041 (score: 0.469)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00006603 (score: 1.000; bootstrap: 100%)
  • WBGene00006602 (score: 0.479)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0231979 (score: 1.000; bootstrap: 100%)
  • DDB0231987 (score: 0.186)
  • DDB0231988 (score: 0.052)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0027560 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA17960-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Oryza gramene

  • Q6ERD9 (score: 1.000; bootstrap: 100%)
  • Q75II7 (score: 1.000; bootstrap: 100%)
  • Q5JNJ1 (score: 0.789)
  • Q9AX07 (score: 0.664)
  • Q8H7S6 (score: 0.658)
  • Q6Z548 (score: 0.520)
  • Q6KAF3 (score: 0.431)
  • Q6ZCH3 (score: 0.413)
  • Q69PA5 (score: 0.353)
  • Q6ZCH2 (score: 0.272)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR126C (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC3283 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

E. coli O157

OTSA

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00982 Glycosyltransferase family 20

Superfamily (EcoliWiki Page)

SUPERFAMILY:53756

EcoCyc

EcoCyc:EG11751

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11751

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001689

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1701

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006318

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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