zwf:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="V46abcc227f171"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF02781 PF02781  Glucose-6-phosphate dehydrogenase, C-terminal domain]
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00479 PF00479  Glucose-6-phosphate dehydrogenase, NAD binding domain]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=51735 SUPERFAMILY:51735]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00479 PFAM:PF00479]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR23429:SF0 PTHR23429:SF0]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=55347 SUPERFAMILY:55347]
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[[EcoCyc]]
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EcoCyc:EG11221
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11221
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001199
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1203
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0006171
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
__NOTOC__
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===Categories===
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Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000018551 (score: 1.000; bootstrap: 100%)
  • ENSANGP00000012074 (score: 0.935)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000010572 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT5G40760 (score: 1.000; bootstrap: 100%)
  • AT3G27300 (score: 0.854)
  • AT5G13110 (score: 0.235)
  • AT1G24280 (score: 0.231)
  • AT5G35790 (score: 0.226)
  • AT1G09420 (score: 0.068)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000025996 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00028408 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00007108 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000028993 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000007563 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0217233 (score: 1.000; bootstrap: 100%)
  • DDB0231285 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0004057 (score: 1.000; bootstrap: 100%)
  • FBgn0037147 (score: 0.167)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11679-PA (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000003917 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000291567 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000022920 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000011422 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Mus musculus

  • MGI:105979 (score: 1.000; bootstrap: 99%)
  • MGI:105977 (score: 0.896)

From Inparanoid:20070104

Oryza gramene

  • Q7X7I6 (score: 1.000; bootstrap: 100%)
  • Q8RY51 (score: 0.992)
  • Q9LRJ1 (score: 0.873)
  • Q9LRJ0 (score: 0.871)
  • Q9LRI9 (score: 0.867)
  • Q6K5H5 (score: 0.840)
  • Q9XJ53 (score: 0.232)
  • Q7XAV7 (score: 0.227)
  • Q7EYK9 (score: 0.227)
  • Q75IZ9 (score: 0.219)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000000218 (score: 1.000; bootstrap: 59%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000023543 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL241C (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAC3A128 (score: 1.000; bootstrap: 100%)
  • SPCC7941c (score: 0.077)
  • SPAC3C73c (score: 0.072)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000143893 (score: 1.000; bootstrap: 99%)
  • NEWSINFRUP00000161861 (score: 0.653)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00028122001 (score: 1.000; bootstrap: 100%)
  • GSTENP00023666001 (score: 0.637)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000049845 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Shigella flexneri

ZWF

From SHIGELLACYC

E. coli O157

ZWF

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain

Pfam (EcoliWiki Page)

PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain

Superfamily (EcoliWiki Page)

SUPERFAMILY:51735

Panther (EcoliWiki Page)

PTHR23429:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:55347

EcoCyc

EcoCyc:EG11221

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11221

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001199

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1203

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006171

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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