rsmF:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
touch
 
(6 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="T46abcbb13b63a"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46abcbb13b63a"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 222: Line 222:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="G46abcbd6cc087"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="G46abcbd6cc087"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01189 PFAM:PF01189]
[http://pfam.janelia.org/family/PF01189 PF01189 NOL1/NOP2/sun family]
|
|
   
   
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF01189 PF01189  NOL1/NOP2/sun family]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=53335 SUPERFAMILY:53335]
|
|-
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR22807:SF20 PTHR22807:SF20]
|
|-
|
[[EcoCyc]]
|
EcoCyc:G7008
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG14023
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003595
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB3777
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0006106
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 251: Line 307:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="H46a813880d95d"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="H46a813880d95d"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Arabidopsis thaliana

  • AT4G26600 (score: 1.000; bootstrap: 93%)
  • AT5G55920 (score: 0.585)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000019607 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00029233 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00021073 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000022151 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000017430 (score: 1.000; bootstrap: 87%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050309-7 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0204605 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0033741 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA21153-PA (score: 1.000; bootstrap: 91%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023281 (score: 1.000; bootstrap: 92%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000313272 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000024589 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022546 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Mus musculus

  • MGI:107891 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Oryza gramene

  • Q69MP1 (score: 1.000; bootstrap: 88%)
  • Q6Z5K9 (score: 1.000; bootstrap: 88%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000007827 (score: 1.000; bootstrap: 98%)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000024938 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000041755 (score: 0.096)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YNL061W (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBP8B70c (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000156109 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013399001 (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

E. coli O157

YEBU

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF01189 NOL1/NOP2/sun family

Pfam (EcoliWiki Page)

PF01189 NOL1/NOP2/sun family

Superfamily (EcoliWiki Page)

SUPERFAMILY:53335

Panther (EcoliWiki Page)

PTHR22807:SF20

EcoCyc

EcoCyc:G7008

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG14023

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003595

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3777

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0006106

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rsmF:Evolution&oldid=1390252"