ydjK:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Gallus gallus''   
''Gallus gallus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=103473 SUPERFAMILY:103473]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00083 PFAM:PF00083]
[http://pfam.janelia.org/family/PF07690 PF07690  Major Facilitator Superfamily]
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[[EcoCyc]]
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EcoCyc:G6962
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG13487
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120003550
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB3260
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005910
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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Latest revision as of 08:33, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000018132 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000030050 (score: 0.612)
  • ENSBTAP00000013515 (score: 0.426)
  • ENSBTAP00000004197 (score: 0.337)
  • ENSBTAP00000030783 (score: 0.325)
  • ENSBTAP00000000672 (score: 0.298)
  • ENSBTAP00000034822 (score: 0.292)
  • ENSBTAP00000000676 (score: 0.237)
  • ENSBTAP00000018139 (score: 0.215)
  • ENSBTAP00000024981 (score: 0.174)
  • ENSBTAP00000011256 (score: 0.170)
  • ENSBTAP00000004059 (score: 0.166)
  • ENSBTAP00000008336 (score: 0.159)
  • ENSBTAP00000025892 (score: 0.157)
  • ENSBTAP00000037489 (score: 0.150)
  • ENSBTAP00000011136 (score: 0.138)
  • ENSBTAP00000025016 (score: 0.124)
  • ENSBTAP00000032068 (score: 0.079)
  • ENSBTAP00000034716 (score: 0.069)
  • ENSBTAP00000030060 (score: 0.056)
  • ENSBTAP00000036264 (score: 0.050)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00037754 (score: 1.000; bootstrap: 70%)
  • WBGene00028224 (score: 0.537)
  • WBGene00035744 (score: 0.288)
  • WBGene00040003 (score: 0.220)
  • WBGene00040483 (score: 0.194)
  • WBGene00040251 (score: 0.124)
  • WBGene00034147 (score: 0.121)
  • WBGene00040431 (score: 0.106)
  • WBGene00040001 (score: 0.081)
  • WBGene00032170 (score: 0.067)
  • WBGene00037897 (score: 0.056)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00010772 (score: 1.000; bootstrap: 77%)
  • WBGene00020445 (score: 0.536)
  • WBGene00008084 (score: 0.519)
  • WBGene00044455 (score: 0.285)
  • WBGene00017751 (score: 0.269)
  • WBGene00008110 (score: 0.193)
  • WBGene00013318 (score: 0.134)
  • WBGene00014127 (score: 0.118)
  • WBGene00008271 (score: 0.102)
  • WBGene00003987 (score: 0.061)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000009674 (score: 1.000; bootstrap: 84%)
  • ENSGALP00000009535 (score: 0.718)
  • ENSGALP00000002531 (score: 0.232)
  • ENSGALP00000024171 (score: 0.152)
  • ENSGALP00000018878 (score: 0.144)
  • ENSGALP00000004550 (score: 0.129)

From Inparanoid:20070104

Oryza gramene

  • Q653R2 (score: 1.000; bootstrap: 67%)
  • Q7XPE1 (score: 0.605)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPAPB1E78c (score: 1.000; bootstrap: 53%)

From Inparanoid:20070104

Shigella flexneri

S1563

From SHIGELLACYC

E. coli O157

Z2813

From ECOO157CYC

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Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Superfamily (EcoliWiki Page)

SUPERFAMILY:103473

Pfam (EcoliWiki Page)

PF07690 Major Facilitator Superfamily

EcoCyc

EcoCyc:G6962

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13487

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003550

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3260

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005910

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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