btuE:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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''Apis mellifera''   
''Apis mellifera''   
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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''Bos taurus''   
''Bos taurus''   
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Canis familiaris''   
''Canis familiaris''   
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''Ciona intestinalis''   
''Ciona intestinalis''   
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''Danio rerio''   
''Danio rerio''   
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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''Mus musculus''   
''Mus musculus''   
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''Oryza gramene''   
''Oryza gramene''   
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Schizosaccharomyces pombe''   
''Schizosaccharomyces pombe''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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''Shigella flexneri''   
''Shigella flexneri''   
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''E. coli'' O157  
''E. coli'' O157  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00255 PF00255  Glutathione peroxidase]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52833 SUPERFAMILY:52833]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00255 PFAM:PF00255]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11592:SF0 PTHR11592:SF0]
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[[EcoCyc]]
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EcoCyc:EG10129
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG10129
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120000125
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB0127
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0005709
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
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===Notes===
===Notes===
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==References==
==References==
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{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:33, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000024750 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000021178 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT4G31870 (score: 1.000; bootstrap: 100%)
  • AT2G25080 (score: 0.662)
  • AT4G11600 (score: 0.362)
  • AT2G31570 (score: 0.326)
  • AT2G43350 (score: 0.303)
  • AT3G63080 (score: 0.259)
  • AT1G63460 (score: 0.235)
  • AT2G48150 (score: 0.218)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000024329 (score: 1.000; bootstrap: -1%)
  • ENSBTAP00000029279 (score: 0.356)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00026582 (score: 1.000; bootstrap: 64%)
  • WBGene00039790 (score: 1.000; bootstrap: 66%)
  • WBGene00036635 (score: 0.376)
  • WBGene00024794 (score: 0.205)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009165 (score: 1.000; bootstrap: 60%)
  • WBGene00011045 (score: 1.000; bootstrap: 61%)
  • WBGene00019846 (score: 0.301)
  • WBGene00020373 (score: 0.187)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000005561 (score: 1.000; bootstrap: 68%)
  • ENSCAFP00000013527 (score: 0.200)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000010922 (score: 1.000; bootstrap: 93%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-030410-3 (score: 1.000; bootstrap: 64%)
  • ZDB-EST-030415-12 (score: 0.978)
  • ZDB-GENE-030410-2 (score: 0.668)
  • ZDB-EST-030415-11 (score: 0.651)
  • ZDB-CDNA-050522-403 (score: 0.496)
  • ZDB-CDNA-040718-401 (score: 0.306)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0035438 (score: 1.000; bootstrap: 100%)
  • FBgn0034415 (score: 0.148)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11336-PA (score: 1.000; bootstrap: 100%)
  • GA13504-PA (score: 0.187)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000017282 (score: 1.000; bootstrap: 85%)
  • ENSGALP00000022024 (score: 0.356)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000262661 (score: 1.000; bootstrap: -1%)
  • ENSP00000296734 (score: 0.338)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000025852 (score: 1.000; bootstrap: 55%)
  • ENSMMUP00000002145 (score: 0.442)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000000704 (score: 1.000; bootstrap: 62%)
  • ENSMODP00000024300 (score: 0.250)

From Inparanoid:20070104

Mus musculus

  • MGI:104767 (score: 1.000; bootstrap: 56%)
  • MGI:1914555 (score: 1.000; bootstrap: 54%)
  • MGI:1916840 (score: 0.346)

From Inparanoid:20070104

Oryza gramene

  • Q53MS9 (score: 1.000; bootstrap: 99%)
  • Q8L8G3 (score: 0.445)
  • Q6JAG4 (score: 0.438)
  • Q6QHC9 (score: 0.438)
  • Q6JAH6 (score: 0.438)
  • Q6ESJ0 (score: 0.428)
  • Q7XU04 (score: 0.424)
  • Q8LK64 (score: 0.421)
  • Q6UQ05 (score: 0.417)
  • Q852R3 (score: 0.410)
  • Q9SME6 (score: 0.410)
  • Q9SME4 (score: 0.410)
  • Q7FS88 (score: 0.397)
  • Q9SME5 (score: 0.386)
  • Q5SMW6 (score: 0.369)
  • Q9FEV2 (score: 0.272)
  • Q7XPV2 (score: 0.252)
  • Q38703 (score: 0.214)
  • Q7XYC1 (score: 0.162)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000001274 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000028904 (score: 0.218)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000013913 (score: 1.000; bootstrap: 83%)
  • ENSRNOP00000013979 (score: 0.358)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YBR244W (score: 1.000; bootstrap: 100%)
  • YIR037W (score: 0.611)
  • YKL026C (score: 0.226)

From Inparanoid:20070104

Schizosaccharomyces pombe

  • SPBC32F123c (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000142386 (score: 1.000; bootstrap: 79%)
  • NEWSINFRUP00000136183 (score: 0.272)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00029623001 (score: 1.000; bootstrap: 53%)
  • GSTENP00003915001 (score: 0.075)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000016913 (score: 1.000; bootstrap: 72%)

From Inparanoid:20070104

Shigella flexneri

BTUE

From SHIGELLACYC

E. coli O157

BTUE

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00255 Glutathione peroxidase

Superfamily (EcoliWiki Page)

SUPERFAMILY:52833

Panther (EcoliWiki Page)

PTHR11592:SF0

EcoCyc

EcoCyc:EG10129

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10129

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000125

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0127

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0005709

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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