yddA:Evolution: Difference between revisions

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{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="M46abc0a66b73f"  class=" tableEdit Evolution_homologs_table" 
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!Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
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''Anopheles gambiae''   
''Anopheles gambiae''   
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From Inparanoid:20070104  
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''Apis mellifera''   
''Apis mellifera''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Arabidopsis thaliana''   
''Arabidopsis thaliana''   
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From Inparanoid:20070104  
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''Bos taurus''   
''Bos taurus''   
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From Inparanoid:20070104  
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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From Inparanoid:20070104  
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Canis familiaris''   
''Canis familiaris''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Ciona intestinalis''   
''Ciona intestinalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Drosophila melanogaster''   
''Drosophila melanogaster''   
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From Inparanoid:20070104  
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''Drosophila pseudoobscura''   
''Drosophila pseudoobscura''   
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''Gallus gallus''   
''Gallus gallus''   
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''Homo sapiens''   
''Homo sapiens''   
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''Macaca mulatta''   
''Macaca mulatta''   
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''Monodelphis domestica''   
''Monodelphis domestica''   
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From Inparanoid:20070104  
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''Mus musculus''   
''Mus musculus''   
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From Inparanoid:20070104  
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''Oryza gramene''   
''Oryza gramene''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Pan troglodytes''   
''Pan troglodytes''   
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''Rattus norvegicus''   
''Rattus norvegicus''   
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''Saccharomyces cerevisiae''   
''Saccharomyces cerevisiae''   
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''Takifugu rubripes''   
''Takifugu rubripes''   
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''E. coli'' O157
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YDDA
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From ECOO157CYC
 
|- class="tableEdit_footer"
|<span class="tableEdit_editLink plainlinks">[{{SERVER}}{{SCRIPTPATH}}?title=Special:TableEdit&id=421aa90e079fa326b6494f812ad13e79.46967.M46abc0a66b73f&page=46967&pagename={{FULLPAGENAMEE}}&type=&template=Evolution_homologs_table edit table]</span> || ||
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{{Evolution_homologs_table_help}}
 


===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/ BLAST]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://130.14.29.110/BLAST/Blast.cgi?CMD=Web&LAYOUT=TwoWindows&AUTO_FORMAT=Semiauto&ALIGNMENTS=250&ALIGNMENT_VIEW=Pairwise&CLIENT=web&COMPOSITION_BASED_STATISTICS=on&DATABASE=nr&CDD_SEARCH=on&DESCRIPTIONS=500&ENTREZ_QUERY=%28none%29&EXPECT=10&FORMAT_OBJECT=Alignment&FORMAT_TYPE=HTML&I_THRESH=0.005&MATRIX_NAME=BLOSUM62&NCBI_GI=on&PAGE=Proteins&PROGRAM=blastp&RUN_PSIBLAST=on&SERVICE=plain&SET_DEFAULTS.x=36&SET_DEFAULTS.y=5&SHOW_OVERVIEW=on&END_OF_HTTPGET=Yes&SHOW_LINKOUT=yes&GET_SEQUENCE=yes&SEARCH_NAME=psi_bp/ CDD]
*[http://inparanoid.sbc.su.se/cgi-bin/eid_search.pl?id=NP_416013&idtype=all&start=on&species=All&conf=0.05 InParanoid]
*[http://inparanoid.sbc.su.se/cgi-bin/gene_search.cgi?id=NP_416013&idtype=all&all_or_selection=all&specieslist=1&scorelimit=0.05&.submit=Submit&.cgifields=specieslist&.cgifields=idtype&.cgifields=all_or_selection InParanoid]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]
*[http://www.sanger.ac.uk/PostGenomics/S_pombe/YOGY/ YOGY]


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|- {{table_heading_style}}
|- {{table_heading_style}}
!Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-
|-  
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|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00005 PFAM:PF00005]
[http://pfam.janelia.org/family/PF00005 PF00005 ABC transporter]
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|-class='sortbottom'
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|[{{SERVER}}/colipedia/index.php/Special:TableEdit?id=421aa90e079fa326b6494f812ad13e79.46967.L46abc0d0e8d86&page=46967&pagename={{FULLPAGENAMEE}} edit table] || ||
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
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|-
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=90123 SUPERFAMILY:90123]
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|-
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF06472 PF06472  ABC transporter transmembrane region 2]
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|-
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[[EcoCyc]]
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EcoCyc:EG11742
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11742
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001681
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[EchoBASE]]
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EchoBASE:EB1693
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
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[[ASAP]]
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ASAP:ABE-0004984
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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<protect><!--Families_notes--></protect>
<protect><!--Families_notes--></protect>
===Notes===
===Notes===
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==References==
==References==
{{BacktoTop}}
{{BacktoTop}}
{{RefHelp}}
{{RefHelp}}
<references/>
<references />
<noinclude>
__NOTOC__
__NOTOC__
[[Category:Genes with homologs in Anopheles gambiae ]][[Category:Genes with homologs in Apis mellifera ]][[Category:Genes with homologs in Arabidopsis thaliana ]][[Category:Genes with homologs in Bos taurus ]][[Category:Genes with homologs in Caenorhabditis briggsae ]][[Category:Genes with homologs in Caenorhabditis elegans ]][[Category:Genes with homologs in Canis familiaris ]][[Category:Genes with homologs in Ciona intestinalis ]][[Category:Genes with homologs in Danio rerio ]][[Category:Genes with homologs in Dictyostelium discoideum ]][[Category:Genes with homologs in Drosophila melanogaster ]][[Category:Genes with homologs in Drosophila pseudoobscura ]][[Category:Genes with homologs in Gallus gallus ]][[Category:Genes with homologs in Homo sapiens ]][[Category:Genes with homologs in Macaca mulatta ]][[Category:Genes with homologs in Monodelphis domestica ]][[Category:Genes with homologs in Mus musculus ]][[Category:Genes with homologs in Oryza gramene ]][[Category:Genes with homologs in Pan troglodytes ]][[Category:Genes with homologs in Rattus norvegicus ]][[Category:Genes with homologs in Saccharomyces cerevisiae ]][[Category:Genes with homologs in Takifugu rubripes ]][[Category:Genes with homologs in Tetraodon nigroviridis ]][[Category:Genes with homologs in Xenopus tropicalis ]][[Category:Genes with homologs in E. coli O157]]</noinclude>
===Categories===
{{BacktoTop}}
[[Category:Genes with homologs in Anopheles gambiae ]]
[[Category:Genes with homologs in Apis mellifera ]]
[[Category:Genes with homologs in Arabidopsis thaliana ]]
[[Category:Genes with homologs in Bos taurus ]]
[[Category:Genes with homologs in Caenorhabditis briggsae ]]
[[Category:Genes with homologs in Caenorhabditis elegans ]]
[[Category:Genes with homologs in Canis familiaris ]]
[[Category:Genes with homologs in Ciona intestinalis ]]
[[Category:Genes with homologs in Danio rerio ]]
[[Category:Genes with homologs in Dictyostelium discoideum ]]
[[Category:Genes with homologs in Drosophila melanogaster ]]
[[Category:Genes with homologs in Drosophila pseudoobscura ]]
[[Category:Genes with homologs in Gallus gallus ]]
[[Category:Genes with homologs in Homo sapiens ]]
[[Category:Genes with homologs in Macaca mulatta ]]
[[Category:Genes with homologs in Monodelphis domestica ]]
[[Category:Genes with homologs in Mus musculus ]]
[[Category:Genes with homologs in Oryza gramene ]]
[[Category:Genes with homologs in Pan troglodytes ]]
[[Category:Genes with homologs in Rattus norvegicus ]]
[[Category:Genes with homologs in Saccharomyces cerevisiae ]]
[[Category:Genes with homologs in Takifugu rubripes ]]
[[Category:Genes with homologs in Tetraodon nigroviridis ]]
[[Category:Genes with homologs in Xenopus tropicalis ]]
[[Category:Genes with homologs in E. coli O157]]

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000020053 (score: 1.000; bootstrap: 49%)
  • ENSANGP00000019853 (score: 0.251)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000000491 (score: 1.000; bootstrap: 75%)
  • ENSAPMP00000010280 (score: 0.220)

From Inparanoid:20070104

Arabidopsis thaliana

  • AT1G54350 (score: 1.000; bootstrap: 95%)

From Inparanoid:20070104

Bos taurus

  • ENSBTAP00000019482 (score: 1.000; bootstrap: 94%)
  • ENSBTAP00000033452 (score: 0.108)
  • ENSBTAP00000027382 (score: 0.079)

From Inparanoid:20070104

Caenorhabditis briggsae

  • WBGene00038279 (score: 1.000; bootstrap: 87%)
  • WBGene00027211 (score: 0.167)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00004058 (score: 1.000; bootstrap: 84%)
  • WBGene00004059 (score: 0.679)
  • WBGene00004061 (score: 0.300)
  • WBGene00004060 (score: 0.071)
  • WBGene00004062 (score: 0.060)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000024885 (score: 1.000; bootstrap: 86%)
  • ENSCAFP00000014756 (score: 0.069)
  • ENSCAFP00000029809 (score: 0.067)
  • ENSCAFP00000028386 (score: 0.055)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000011578 (score: 1.000; bootstrap: 94%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040426-2868 (score: 1.000; bootstrap: 84%)
  • ZDB-CDNA-040425-3815 (score: 1.000; bootstrap: 85%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0215371 (score: 1.000; bootstrap: 59%)
  • DDB0215374 (score: 1.000; bootstrap: 63%)
  • DDB0214891 (score: 0.138)

From Inparanoid:20070104

Drosophila melanogaster

  • FBgn0031069 (score: 1.000; bootstrap: 69%)
  • FBgn0039890 (score: 0.243)

From Inparanoid:20070104

Drosophila pseudoobscura

  • GA11765-PA (score: 1.000; bootstrap: 74%)
  • GA15347-PA (score: 0.121)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000016610 (score: 1.000; bootstrap: 88%)
  • ENSGALP00000009045 (score: 0.128)
  • ENSGALP00000011553 (score: 0.104)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000349396 (score: 1.000; bootstrap: 91%)
  • ENSP00000263889 (score: 0.110)
  • ENSP00000218104 (score: 0.085)
  • ENSP00000310688 (score: 0.081)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000005397 (score: 1.000; bootstrap: 90%)
  • ENSMMUP00000016750 (score: 0.078)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000007903 (score: 1.000; bootstrap: 85%)
  • ENSMODP00000005548 (score: 0.101)
  • ENSMODP00000023116 (score: 0.070)
  • ENSMODP00000010355 (score: 0.066)

From Inparanoid:20070104

Mus musculus

  • MGI:1349217 (score: 1.000; bootstrap: 92%)
  • MGI:1349216 (score: 0.095)
  • MGI:1349467 (score: 0.075)
  • MGI:1349215 (score: 0.070)

From Inparanoid:20070104

Oryza gramene

  • Q5QNE1 (score: 1.000; bootstrap: 96%)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000044395 (score: 1.000; bootstrap: 90%)
  • ENSPTRP00000001681 (score: 0.102)
  • ENSPTRP00000008247 (score: 0.083)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000016040 (score: 1.000; bootstrap: 90%)
  • ENSRNOP00000016739 (score: 0.100)
  • ENSRNOP00000021064 (score: 0.078)
  • ENSRNOP00000025863 (score: 0.068)

From Inparanoid:20070104

Saccharomyces cerevisiae

  • YPL147W (score: 1.000; bootstrap: 73%)
  • YKL188C (score: 0.068)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000173316 (score: 1.000; bootstrap: 93%)
  • NEWSINFRUP00000165461 (score: 0.102)
  • NEWSINFRUP00000165459 (score: 0.095)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00030339001 (score: 1.000; bootstrap: 86%)
  • GSTENP00019846001 (score: 0.068)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000018017 (score: 1.000; bootstrap: 80%)
  • ENSXETP00000016800 (score: 0.269)

From Inparanoid:20070104

E. coli O157

YDDA

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:90123

Pfam (EcoliWiki Page)

PF06472 ABC transporter transmembrane region 2

EcoCyc

EcoCyc:EG11742

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11742

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001681

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1693

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004984

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


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