nhoA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
/Volumes/r3/t3/ul/working/touchTables/touch_all_tables.php
touch
 
(5 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="U46abbfa70f068"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46abbfa70f068"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 159: Line 159:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="B46abbfb47033e"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="B46abbfb47033e"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00797 PFAM:PF00797]
[http://pfam.janelia.org/family/PF00797 PF00797 N-acetyltransferase]
|
|
   
   
|-
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11786:SF0 PTHR11786:SF0]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=54001 SUPERFAMILY:54001]
|
|-
|
[[EcoCyc]]
|
EcoCyc:G6770
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG13780
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003359
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB3542
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0004882
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 188: Line 237:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="L46a809e3036f2"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="L46a809e3036f2"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:32, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000021898 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Ciona intestinalis

  • ENSCINP00000002104 (score: 1.000; bootstrap: 100%)
  • ENSCINP00000002232 (score: 0.580)
  • ENSCINP00000006205 (score: 0.574)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040724-256 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040724-62 (score: 1.000; bootstrap: 100%)
  • ZDB-GENE-040724-93 (score: 0.869)
  • ZDB-CDNA-040801-115 (score: 0.084)
  • ZDB-GENE-040801-107 (score: 0.084)
  • ZDB-CDNA-041010-49 (score: 0.060)
  • ZDB-GENE-041010-49 (score: 0.060)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000008777 (score: 1.000; bootstrap: 100%)
  • ENSGALP00000008779 (score: 0.709)
  • ENSGALP00000008780 (score: 0.600)
  • ENSGALP00000008778 (score: 0.541)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000307218 (score: 1.000; bootstrap: 100%)
  • ENSP00000286479 (score: 0.793)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000028547 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000007787 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Mus musculus

  • MGI:109201 (score: 1.000; bootstrap: 100%)
  • MGI:97279 (score: 0.820)
  • MGI:102537 (score: 0.707)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000034296 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000034297 (score: 0.805)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000051430 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000048448 (score: 0.705)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000165208 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015524001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

E. coli O157

Z2250

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00797 N-acetyltransferase

Panther (EcoliWiki Page)

PTHR11786:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:54001

EcoCyc

EcoCyc:G6770

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13780

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003359

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3542

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0004882

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=nhoA:Evolution&oldid=1389948"