ycaC:Evolution: Difference between revisions

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!Organism!!Homologs (Statistics)!!Comments
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''Caenorhabditis briggsae''   
''Caenorhabditis briggsae''   
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''Caenorhabditis elegans''   
''Caenorhabditis elegans''   
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''Danio rerio''   
''Danio rerio''   
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From Inparanoid:20070104  
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''Dictyostelium discoideum''   
''Dictyostelium discoideum''   
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From Inparanoid:20070104  
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''Rattus norvegicus''   
''Rattus norvegicus''   
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From Inparanoid:20070104  
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''Takifugu rubripes''   
''Takifugu rubripes''   
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From Inparanoid:20070104  
From Inparanoid:20070104  
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''Tetraodon nigroviridis''   
''Tetraodon nigroviridis''   
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From Inparanoid:20070104  
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''Xenopus tropicalis''   
''Xenopus tropicalis''   
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From Inparanoid:20070104  
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''Shigella flexneri''   
''Shigella flexneri''   
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From SHIGELLACYC  
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''E. coli'' O157  
''E. coli'' O157  
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From ECOO157CYC  
From ECOO157CYC  
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===Do-It-Yourself Web Tools===
===Do-It-Yourself Web Tools===
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!Database!!Accession!!Notes
!|Database!!Accession!!Notes
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[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
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[http://pfam.janelia.org/family/PF00857 PF00857  Isochorismatase family]
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
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[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52499 SUPERFAMILY:52499]
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[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
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[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00857 PFAM:PF00857]
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR14119:SF0 PTHR14119:SF0]
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[[EcoCyc]]
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EcoCyc:EG11241
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EcoGene]]
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EcoGene:EG11241
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[RegulonDB]]
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RegulonDB:ECK120001218
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[EchoBASE]]
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EchoBASE:EB1223
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
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[[ASAP]]
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ASAP:ABE-0003050
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''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
 
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===Notes===
===Notes===
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==References==
==References==
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{{RefHelp}}
{{RefHelp}}
<references/>
<references />
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__NOTOC__
__NOTOC__
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===Categories===
===Categories===
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Latest revision as of 08:31, 27 May 2013

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Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

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See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Caenorhabditis briggsae

  • WBGene00028554 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Caenorhabditis elegans

  • WBGene00009436 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-050522-178 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Dictyostelium discoideum

  • DDB0185412 (score: 1.000; bootstrap: 100%)
  • DDB0185392 (score: 0.299)
  • DDB0186246 (score: 0.184)
  • DDB0215797 (score: 0.174)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000022621 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000026706 (score: 0.386)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000161392 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00015435001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000000280 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000018162 (score: 0.447)

From Inparanoid:20070104

Shigella flexneri

YCAC

From SHIGELLACYC

E. coli O157

YCAC

From ECOO157CYC

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Do-It-Yourself Web Tools


Notes

Families

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See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00857 Isochorismatase family

Superfamily (EcoliWiki Page)

SUPERFAMILY:52499

Panther (EcoliWiki Page)

PTHR14119:SF0

EcoCyc

EcoCyc:EG11241

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG11241

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120001218

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB1223

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0003050

Escherichia coli str. K-12 substr. MG1655

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Notes

Links

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References

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See Help:References for how to manage references in EcoliWiki.


Categories

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