rimK:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Data loaded by TableEdit_Loader.
touch
 
(4 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="A46abaff98140e"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="A46abaff98140e"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 175: Line 175:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="K46abb00b24212"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="K46abb00b24212"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21621:SF0 PTHR21621:SF0]
|
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF02222 PFAM:PF02222]
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=56059 SUPERFAMILY:56059]
|
|
   
   
|-  
|-  
|
|
[http://www.pantherdb.org/ Panther] ([[Panther|EcoliWiki Page]])
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.pantherdb.org/panther/family.do?clsAccession=PTHR21621:SF0 PTHR21621:SF0]
[http://pfam.janelia.org/family/PF08443 PF08443  RimK-like ATP-grasp domain]
|
|
   
   
|-
|
[[EcoCyc]]
|
EcoCyc:EG10852
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG10852
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120000843
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB0845
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0002903
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 211: Line 253:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="U46a7fd4edda4f"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="U46a7fd4edda4f"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Bos taurus

  • ENSBTAP00000023262 (score: 1.000; bootstrap: 100%)
  • ENSBTAP00000004262 (score: 0.611)

From Inparanoid:20070104

Canis familiaris

  • ENSCAFP00000020456 (score: 1.000; bootstrap: 100%)
  • ENSCAFP00000003727 (score: 0.633)

From Inparanoid:20070104

Danio rerio

  • ZDB-GENE-040912-20 (score: 1.000; bootstrap: 100%)
  • ZDB-CDNA-040912-22 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Gallus gallus

  • ENSGALP00000023045 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Homo sapiens

  • ENSP00000350136 (score: 1.000; bootstrap: 100%)
  • ENSP00000343675 (score: 0.649)
  • ENSP00000324766 (score: 0.553)

From Inparanoid:20070104

Macaca mulatta

  • ENSMMUP00000029852 (score: 1.000; bootstrap: 100%)
  • ENSMMUP00000017241 (score: 0.428)

From Inparanoid:20070104

Monodelphis domestica

  • ENSMODP00000022444 (score: 1.000; bootstrap: 100%)
  • ENSMODP00000021607 (score: 0.665)

From Inparanoid:20070104

Mus musculus

  • MGI:1918325 (score: 1.000; bootstrap: 100%)
  • MGI:3040686 (score: 0.493)

From Inparanoid:20070104

Pan troglodytes

  • ENSPTRP00000007924 (score: 1.000; bootstrap: 100%)
  • ENSPTRP00000001047 (score: 0.641)
  • ENSPTRP00000023897 (score: 0.598)

From Inparanoid:20070104

Rattus norvegicus

  • ENSRNOP00000028923 (score: 1.000; bootstrap: 100%)
  • ENSRNOP00000011586 (score: 0.524)

From Inparanoid:20070104

Takifugu rubripes

  • NEWSINFRUP00000140490 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00013753001 (score: 1.000; bootstrap: 100%)

From Inparanoid:20070104

Xenopus tropicalis

  • ENSXETP00000020712 (score: 1.000; bootstrap: 100%)
  • ENSXETP00000029485 (score: 0.555)

From Inparanoid:20070104

Shigella flexneri

RIMK

From SHIGELLACYC

E. coli O157

RIMK

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Panther (EcoliWiki Page)

PTHR21621:SF0

Superfamily (EcoliWiki Page)

SUPERFAMILY:56059

Pfam (EcoliWiki Page)

PF08443 RimK-like ATP-grasp domain

EcoCyc

EcoCyc:EG10852

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG10852

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120000843

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB0845

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002903

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=rimK:Evolution&oldid=1389468"