gsiA:Evolution: Difference between revisions

From EcoliWiki
Jump to navigation Jump to search
← Older edit
Data loaded by TableEdit_Loader.
touch
 
(7 intermediate revisions by the same user not shown)
Line 29: Line 29:
*  
*  
****************************************************************************************** -->{{Evolution_homologs_table_help}}
****************************************************************************************** -->{{Evolution_homologs_table_help}}
{|   id="D46abafa263549"  class=" tableEdit Evolution_homologs_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46abafa263549"  class=" tableEdit Evolution_homologs_table"   
|- {{table heading style}}
|- {{table heading style}}
!|Organism!!Homologs (Statistics)!!Comments
!|Organism!!Homologs (Statistics)!!Comments
Line 106: Line 106:
*  
*  
****************************************************************************************** -->{{Gene_accessions_help}}
****************************************************************************************** -->{{Gene_accessions_help}}
{|   id="T46abafa610120"  class=" tableEdit Gene_accessions_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="T46abafa610120"  class=" tableEdit Gene_accessions_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Database!!Accession!!Notes
!|Database!!Accession!!Notes
|-  
|-  
|
|
[http://www.sanger.ac.uk/Software/Pfam/ PFAM] ([[PFAM|EcoliWiki Page]])  
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
|
[http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF00005 PFAM:PF00005]
[http://pfam.janelia.org/family/PF00005 PF00005  ABC transporter]
|
|-  
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF00005 PF00005 ABC transporter]
|
|
   
   
Line 123: Line 130:
|
|
   
   
|-
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/ Superfamily] ([[Superfamily|EcoliWiki Page]])
|
[http://supfam.cs.bris.ac.uk/SUPERFAMILY/cgi-bin/genome.cgi?sf=52540 SUPERFAMILY:52540]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF08352 PF08352  Oligopeptide/dipeptide transporter, C-terminal region]
|
|-
|
[http://pfam.janelia.org/ Pfam] ([[Pfam|EcoliWiki Page]])
|
[http://pfam.janelia.org/family/PF08352 PF08352  Oligopeptide/dipeptide transporter, C-terminal region]
|
|-
|
[[EcoCyc]]
|
EcoCyc:G6429
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EcoGene]]
|
EcoGene:EG13472
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[RegulonDB]]
|
RegulonDB:ECK120003029
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[EchoBASE]]
|
EchoBASE:EB3245
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]
|-
|
[[ASAP]]
|
ASAP:ABE-0002830
|
''Escherichia coli'' str. K-12 substr. [[:Category:Strain:MG1655|MG1655]]


|- class="tableEdit_footer"  
|- class="tableEdit_footer"  
Line 142: Line 205:
*  
*  
****************************************************************************************** -->
****************************************************************************************** -->
{|   id="D46a7fd04aac96"  class=" tableEdit Links_table"   
{| border="2" cellpadding="4" cellspacing="0" style="margin: 1em 1em 1em 0; border: 1px #aaa solid; border-collapse: collapse;"  id="D46a7fd04aac96"  class=" tableEdit Links_table"   
|- {{table_heading_style}}
|- {{table_heading_style}}
!|Name!!URL!!Comments
!|Name!!URL!!Comments

Latest revision as of 08:31, 27 May 2013

{{#css:Suppresslinks.css}}<css>h1 .editsection { display:none;} h2 .editsection { display:none;}</css>

Quickview   Gene   Gene Product(s)   Expression   Evolution   On One Page    
Homologs Families Links References Suggestions

Homologs in Other Organisms

[back to top]


See Help:Evolution_homologs for help entering or editing information in this section of EcoliWiki.

Organism Homologs (Statistics) Comments

Anopheles gambiae

  • ENSANGP00000000682 (score: 1.000; bootstrap: 99%)

From Inparanoid:20070104

Apis mellifera

  • ENSAPMP00000027447 (score: 1.000; bootstrap: 99%)
  • YP_025300 (score: 1.000; bootstrap: 97%)

From Inparanoid:20070104

Tetraodon nigroviridis

  • GSTENP00022364001 (score: 1.000; bootstrap: 56%)
  • GSTENP00030600001 (score: 0.153)
  • GSTENP00019589001 (score: 0.144)
  • GSTENP00022664001 (score: 0.133)
  • GSTENP00012322001 (score: 0.120)
  • GSTENP00012676001 (score: 0.120)
  • GSTENP00011937001 (score: 0.119)
  • GSTENP00008809001 (score: 0.087)
  • GSTENP00036523001 (score: 0.082)
  • GSTENP00029830001 (score: 0.064)
  • GSTENP00006944001 (score: 0.063)
  • GSTENP00019587001 (score: 0.058)
  • YP_025300 (score: 0.098)

From Inparanoid:20070104

Shigella flexneri

S0822

From SHIGELLACYC

E. coli O157

Z1053

From ECOO157CYC

edit table


Do-It-Yourself Web Tools


Notes

Families

[back to top]


See Help:Gene_accessions for help with entering information into the Gene Accessions table.

Database Accession Notes

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Pfam (EcoliWiki Page)

PF00005 ABC transporter

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Superfamily (EcoliWiki Page)

SUPERFAMILY:52540

Pfam (EcoliWiki Page)

PF08352 Oligopeptide/dipeptide transporter, C-terminal region

Pfam (EcoliWiki Page)

PF08352 Oligopeptide/dipeptide transporter, C-terminal region

EcoCyc

EcoCyc:G6429

Escherichia coli str. K-12 substr. MG1655

EcoGene

EcoGene:EG13472

Escherichia coli str. K-12 substr. MG1655

RegulonDB

RegulonDB:ECK120003029

Escherichia coli str. K-12 substr. MG1655

EchoBASE

EchoBASE:EB3245

Escherichia coli str. K-12 substr. MG1655

ASAP

ASAP:ABE-0002830

Escherichia coli str. K-12 substr. MG1655

edit table


Notes

Links

[back to top]



References

[back to top]


See Help:References for how to manage references in EcoliWiki.


Categories

[back to top]


Retrieved from "https://ecoliwiki.org/colipedia/index.php?title=gsiA:Evolution&oldid=1389449"